Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G29195 39 / 0.0008 unknown protein AT1G06980 39 / 0.0009 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036859 [exp] 335 / 5e-119 AT1G06980 41 / 1e-04 unknown protein Lus10000440 [exp] 72 / 8e-15 AT1G70620 192 / 2e-50 cyclin-related (.1.2.3) Lus10026699 [exp] 70 / 6e-14 AT1G70620 213 / 4e-57 cyclin-related (.1.2.3) Lus10002327 [exp] 66 / 2e-13 AT1G29195 47 / 1e-06 unknown protein Lus10026092 [exp] 63 / 3e-12 ND 42 / 5e-05 Lus10020386 [exp] 47 / 3e-06 AT1G06980 44 / 3e-05 unknown protein Lus10038171 [exp] 46 / 3e-06 AT1G06980 46 / 2e-06 unknown protein Lus10009561 [exp] 46 / 3e-06 AT1G06980 44 / 1e-05 unknown protein Lus10025927 [exp] 46 / 4e-06 AT1G06980 43 / 4e-05 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G186700 [exp] 194 / 3e-63 AT5G50090 41 / 1e-04 unknown protein Potri.010G046225 [exp] 190 / 1e-61 ND / Potri.002G217100 [exp] 76 / 6e-17 ND / Potri.003G179600 [exp] 64 / 1e-12 ND / Potri.014G170000 [exp] 59 / 1e-10 ND / Potri.002G242400 [exp] 44 / 3e-05 AT1G06980 45 / 9e-06 unknown protein Potri.011G066500 [exp] 39 / 0.0006 AT1G29195 170 / 6e-54 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006211 pacid=23139709 polypeptide=Lus10006211 locus=Lus10006211.g ID=Lus10006211.BGIv1.0 annot-version=v1.0 ATGCCGACTGGTTGCTACTGTTGCTTGTCGAGCCGTCACATGAAATCCAGAAGAAAGCATGAATCCAATGTCAGGATAGTTCATCCTGGTGGAAGGCAGG AGCTTTACGAATTGGCTATTCCTGTGCAGGAAATCATGCAGAAGTATCCGGGGACTTGTATTGCTAAGCCGGGAGTTTTTAACAATCCTGAAGGGTGTCT TCTACGGCCGGAAGAGAAGCTGATGCCTGGTAACAAGTACCTTGTAATTCCATCAACCACAGCTGAGAAACTGAAGCACAGACATTCTCAAAGAGAAAAG TCGAAAGTGGATGATGAGATTGATGATATGTCGGATGTGAGCATAACTTGGGATGAACATGATATTTCTGAGGAATCTCTATGTTCTGCAAAAGATTTCT ATGCTTCTAAGGACAGGTTAACAAGGCGTTCGGAGAGGAAGAAGAAGACCATCAGGTCTCGACAGCCTTTCGTACCGCCACTTCCAACGATACGAGGTTT GAAGGGTTTAAACTGGGAGCCTAGCCTTACTTCTGTGCAGGAACTATCTCCATGA
AA sequence Show only first row Show all	>Lus10006211 pacid=23139709 polypeptide=Lus10006211 locus=Lus10006211.g ID=Lus10006211.BGIv1.0 annot-version=v1.0 MPTGCYCCLSSRHMKSRRKHESNVRIVHPGGRQELYELAIPVQEIMQKYPGTCIAKPGVFNNPEGCLLRPEEKLMPGNKYLVIPSTTAEKLKHRHSQREK SKVDDEIDDMSDVSITWDEHDISEESLCSAKDFYASKDRLTRRSERKKKTIRSRQPFVPPLPTIRGLKGLNWEPSLTSVQELSP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06980			unknown protein		Lus10006211 [exp]	0	1
AT2G28230			TATA-binding related factor (T...		Lus10030654 [exp]	1.0	0.9126
AT4G15950		RDM2, NRPE4, NR...	RNA-DIRECTED DNA METHYLATION 2...		Lus10038766 [exp]	4.0	0.9030
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	5.7	0.9071
AT5G18100		CSD3	copper/zinc superoxide dismuta...		Lus10010651 [exp]	6.0	0.8876
AT5G09250		KIWI	ssDNA-binding transcriptional ...		Lus10013733 [exp]	8.4	0.8731
AT2G37025		TRFL8	TRF-like 8 (.1.2)		Lus10013809 [exp]	9.6	0.8568
					Lus10013810 [exp]	10.0	0.8656
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	12.4	0.9033
AT5G65880			unknown protein		Lus10039652 [exp]	13.3	0.8634
AT1G07745		SSN1, ATRAD51D,...	SUPPRESOR OF SNI1, homolog of ...		Lus10005437 [exp]	13.9	0.8850

Compare expression of checked genes

Lus10006211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.