Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70630 602 / 0 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 76 / 5e-14 XEG113 xyloglucanase 113 (.1) AT1G56550 62 / 3e-10 RXGT1 RhamnoGalacturonan specific Xylosyltransferase 1 (.1) AT4G01220 62 / 5e-10 MGP4 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) AT4G01750 60 / 3e-09 RGXT2 rhamnogalacturonan xylosyltransferase 2 (.1) AT1G19360 59 / 4e-09 RRA3 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) AT4G01770 59 / 6e-09 RGXT1 rhamnogalacturonan xylosyltransferase 1 (.1) AT1G75110 57 / 3e-08 RRA2 REDUCED RESIDUAL ARABINOSE 2, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75120 54 / 2e-07 RRA1 REDUCED RESIDUAL ARABINOSE 1, Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28695 52 / 7e-07 Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036860 [exp] 571 / 0 AT1G70630 450 / 2e-157 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10036861 [exp] 245 / 1e-77 AT1G70630 109 / 5e-28 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10005034 [exp] 74 / 2e-13 AT2G35610 886 / 0.0 xyloglucanase 113 (.1) Lus10027804 [exp] 73 / 3e-13 AT2G35610 927 / 0.0 xyloglucanase 113 (.1) Lus10026327 [exp] 67 / 1e-11 AT1G19360 610 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10042340 [exp] 61 / 2e-09 AT1G19360 603 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10018812 [exp] 61 / 2e-09 AT1G19360 636 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Lus10012650 [exp] 60 / 3e-09 AT4G01220 522 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Lus10032710 [exp] 59 / 4e-09 AT1G19360 629 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G186800 [exp] 750 / 0 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G046100 [exp] 568 / 0 AT1G70630 497 / 5e-171 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.004G235800 [exp] 69 / 6e-12 AT2G35610 976 / 0.0 xyloglucanase 113 (.1) Potri.002G139800 [exp] 66 / 4e-11 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.009G113300 [exp] 66 / 5e-11 AT1G19360 655 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.014G042700 [exp] 64 / 1e-10 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G166000 [exp] 63 / 2e-10 AT4G01220 524 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.014G051600 [exp] 61 / 1e-09 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G092400 [exp] 60 / 2e-09 AT4G01220 530 / 0.0 male gametophyte defective 4, Nucleotide-diphospho-sugar transferase family protein (.1.2) Potri.002G134400 [exp] 60 / 4e-09 AT1G19360 622 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10006212 pacid=23139712 polypeptide=Lus10006212 locus=Lus10006212.g ID=Lus10006212.BGIv1.0 annot-version=v1.0 ATGAAGAAGTCGCCAGTAAGTCTATGGTGGATTTGGCTATACGGTTCCTTCCTAATTGCTCTCTCCCTATACGCTACTCGGAAGCTGCCTTCGGTTCAGC AAGTAATCAACAGACGACCCGGTTCGAGTTCGTCAATCGATCCAACCGATCCGAAAACCATCACTATATTCTCTGCAGTTACTCGTCATCCAATCGGTCA AAGACAAAAACTTGCTATTCGTTCTTGGCTGGCTTTATCGAATCAAATCACTGTGGTTCTCTTTTCCCAACACCACCACCCTTCTGTTGTTGATTTCGCT TCTGGGTTTGAAAAACCCAGGGTTTTGCTTGACTCCGCCGTTGATTTCACGTTTCTTGGGACTCCATTCTTCCATTCCATGGTGGAGAGATCACAAGCAT TTGCCACTGACATTGTTGTATTTGCACATTCACAAGCTGTGCTTCTTCCTGATCTTGTTCCTACTTTGAATTTCGCTCATAAGCTTGATGGTTACTGGCT CCTCGTGGCTTCATTGCCGGAGACTTCCTTCTTTGCTGAGGATGGCGAACGGTTGGAACTTGAAGAGGAGATGATACATGGCCGGAATAAGTCGAATCCT TGCAAAGATGCAAGTATGATCATGGCTTGGAATAGTGGCAGCATGCCTTTACATAACGGGGTGCTTCCCCCTTTCTTATTTGGTAAAGGGGTTCACAACC ACTGGCTTGTTAATGAGGCCATTGCATCCGAATTGAGGGTTGTGTTTGATGCAAGCTCGACCATCTCGGGCGCCTTTCTGAACGAGCCAGAAGACATGGG GGATAATAGAAGCTGGGAGGCAGTTGGAAACTCGCATCTTGGTTCTTCATACGGGTCATTGCTCTTTCATGAAGCTAACTACTCAACTTCCCTCCCAAAG CTCGTCAAACATGGCGATCGGTTTGTTTTCACTAAGGGAATGATGTCGGGTTGCTCAGTTAGTAATAATGAGTTGAGGATCTTGCAGCCATTGCTTGAGT TCCAAGCTTCCCTGGAATCACTGCTTGAGATAACTGCGGACGAGACACGGACAGTTGTGCTTGCTGTTGCTGGATATAGTTACAAGGACATGTTGATGAG TTGGGTTTGCAGATTGCGCCGTTTGAAAGTTACCAACTTTATCATTTGTGCTCTGGACCATGAAACCTTTGAATTTTCTGTTCTTCAGGGTTTGCCTGTT TTCTATGATCCATCAGCACCAAGGAACATCAGCTTCAACGATTGCCATTTCGGAACGGAATGCTTCCAGAGAGTAACAAAGGTTAAATCCAGATTGGTTC TCAAGATACTGAAGCTAGGATACAATGTACTCCTGAGTGATGTGGATGTCTACTGGTTTCGAAATCCACAGCAGTTCCTCACCTCATTCGGTCCCGGGTT TCTCGTTGCTCAGTCTGACGAATACAACAAAACCGGTCCGATAAACTTACCAAGGCGCCTCAACTCTGGCTTTTACTTTGCTCGTTCCGATGCTCCAACG ATCGCTGCCATCAATAAGGTCGTGATCCATGCTTCTACTTCAGGCCTTTCCGAGCAGCCAAGCTTCTACGACGTAATGTGTGGAGAAGGTGGATCGAATC GAATCAGCAATAATCAATGTCTAGAACCGGAAACGAATCTGACCGTTCATTTCTTGGATAGAGACCTTTTCCCCAACGGTGCATACTTCGACCTCTGGGA CGAGCCGAATGTAACAGCAGCTTGTATGAAGAAAAGTTGCTTTGTTCTTCACAATAACTGGATTAATGGAAGATTGAAGAAGCTTGAACGCCAAGTTTCG TCCGGTTTGTGGGAGTATGACAGTAGCAAAAGAATGTGTCTTTCCTGCATAACATCAAAATCTATCACTGTCGAATGA
AA sequence Show only first row Show all	>Lus10006212 pacid=23139712 polypeptide=Lus10006212 locus=Lus10006212.g ID=Lus10006212.BGIv1.0 annot-version=v1.0 MKKSPVSLWWIWLYGSFLIALSLYATRKLPSVQQVINRRPGSSSSIDPTDPKTITIFSAVTRHPIGQRQKLAIRSWLALSNQITVVLFSQHHHPSVVDFA SGFEKPRVLLDSAVDFTFLGTPFFHSMVERSQAFATDIVVFAHSQAVLLPDLVPTLNFAHKLDGYWLLVASLPETSFFAEDGERLELEEEMIHGRNKSNP CKDASMIMAWNSGSMPLHNGVLPPFLFGKGVHNHWLVNEAIASELRVVFDASSTISGAFLNEPEDMGDNRSWEAVGNSHLGSSYGSLLFHEANYSTSLPK LVKHGDRFVFTKGMMSGCSVSNNELRILQPLLEFQASLESLLEITADETRTVVLAVAGYSYKDMLMSWVCRLRRLKVTNFIICALDHETFEFSVLQGLPV FYDPSAPRNISFNDCHFGTECFQRVTKVKSRLVLKILKLGYNVLLSDVDVYWFRNPQQFLTSFGPGFLVAQSDEYNKTGPINLPRRLNSGFYFARSDAPT IAAINKVVIHASTSGLSEQPSFYDVMCGEGGSNRISNNQCLEPETNLTVHFLDRDLFPNGAYFDLWDEPNVTAACMKKSCFVLHNNWINGRLKKLERQVS SGLWEYDSSKRMCLSCITSKSITVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70630			Nucleotide-diphospho-sugar tra...		Lus10006212 [exp]	0	1
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10020235 [exp]	7.1	0.8310
					Lus10023643 [exp]	10.1	0.7861
AT4G29540		AtLpxA	bacterial transferase hexapept...		Lus10032684 [exp]	10.2	0.7924
AT5G35170			adenylate kinase family protei...		Lus10019071 [exp]	12.2	0.7749
AT2G43980		ATITPK4	"inositol 1,3,4-trisphosphate ...		Lus10006145 [exp]	14.0	0.7777
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Lus10032785 [exp]	14.2	0.7933
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10036010 [exp]	18.9	0.8068
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Lus10007614 [exp]	21.0	0.7404
AT5G11860		SSP5	SCP1-like small phosphatase 5 ...		Lus10015787 [exp]	23.4	0.7853
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10037504 [exp]	24.5	0.7591

Compare expression of checked genes

Lus10006212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.