Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26510 123 / 1e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) AT1G70640 110 / 7e-31 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein (.1) AT3G48240 102 / 1e-27 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G49920 92 / 8e-23 Octicosapeptide/Phox/Bem1p family protein (.1) AT5G57610 92 / 5e-22 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT5G63130 86 / 2e-21 Octicosapeptide/Phox/Bem1p family protein (.1) AT1G79570 89 / 7e-21 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT2G35050 89 / 1e-20 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) AT1G04700 86 / 2e-19 PB1 domain-containing protein tyrosine kinase (.1) AT1G16270 85 / 2e-19 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036862 [exp] 313 / 8e-111 AT3G26510 122 / 3e-35 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10026700 [exp] 131 / 8e-39 AT3G26510 135 / 3e-40 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Lus10043341 [exp] 108 / 8e-30 AT3G48240 145 / 2e-44 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10019490 [exp] 107 / 2e-29 AT3G48240 149 / 9e-46 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10035641 [exp] 90 / 2e-22 AT5G09620 243 / 6e-78 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10040006 [exp] 93 / 5e-22 AT3G46920 604 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10002588 [exp] 92 / 5e-22 AT4G05150 319 / 2e-104 Octicosapeptide/Phox/Bem1p family protein (.1) Lus10006977 [exp] 92 / 6e-22 AT5G57610 1048 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Lus10031173 [exp] 92 / 7e-22 AT1G79570 963 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G046400 [exp] 139 / 2e-41 AT3G26510 152 / 5e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.008G186500 [exp] 138 / 4e-41 AT3G26510 152 / 1e-46 Octicosapeptide/Phox/Bem1p family protein (.1.2.3.4.5) Potri.012G085000 [exp] 103 / 4e-28 AT5G63130 139 / 4e-42 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.015G083400 [exp] 100 / 5e-27 AT3G48240 152 / 2e-47 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.004G032200 [exp] 91 / 1e-21 AT4G05150 333 / 1e-110 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.006G170700 [exp] 89 / 9e-21 AT5G57610 1087 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.011G041100 [exp] 88 / 1e-20 AT4G05150 297 / 4e-96 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.009G080200 [exp] 88 / 2e-20 AT5G64430 281 / 6e-89 Octicosapeptide/Phox/Bem1p family protein (.1) Potri.001G123500 [exp] 87 / 4e-20 AT2G35050 660 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1) Potri.006G190200 [exp] 87 / 4e-20 AT3G46920 652 / 0.0 Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF00564 [flax] [poplar] PB1 PB1 domain
Representative CDS sequence Show only first row Show all	>Lus10006214 pacid=23139688 polypeptide=Lus10006214 locus=Lus10006214.g ID=Lus10006214.BGIv1.0 annot-version=v1.0 ATGGCAACTACTACTTCGCCGGACTCAGCCACCATCAAGTTCCAATGCAGCCACGGCGGCAAGCTCGTCCCCCGCCCCCTCGACGGCAAGCTCCGCTACC ACGGTGGCGAAACCCGAGTCCTCAGGGTCAGCCGATCGATTTCCTACTCCGAATTATTGATCAAGTTAGGGCGGCTAAATTATGAGGACACTAAGGTGGT GCGTTTGCGTTGCCAATTGCCTGAGGTGGATCTTGATGACGCACTGGTGAACATAGTCTCCGACGAGGATTTGACTAGTCTCATCGAGGAATACGATCGA GTTGCTACTCCTGCAACCTCGTCCTTAAAGATCAGGGCCTTCCTCTCGTCTCCGACAAAAGTATCTGCCGATGATCTATCCTCTACTTCATCTTCCTCAT CCTCGTCCTCGTCCTCCTCGTCACATACTTTTGATGCAAGGTTATGTTCCTCCAAATGTTTCAATAGATGGGCTTCAAAGACGACAACGGTGGCTTCTCC GGCGAGGAAGATCCCCCGATATGGTTACGTCTACGACAGAAATTAA
AA sequence Show only first row Show all	>Lus10006214 pacid=23139688 polypeptide=Lus10006214 locus=Lus10006214.g ID=Lus10006214.BGIv1.0 annot-version=v1.0 MATTTSPDSATIKFQCSHGGKLVPRPLDGKLRYHGGETRVLRVSRSISYSELLIKLGRLNYEDTKVVRLRCQLPEVDLDDALVNIVSDEDLTSLIEEYDR VATPATSSLKIRAFLSSPTKVSADDLSSTSSSSSSSSSSSSHTFDARLCSSKCFNRWASKTTTVASPARKIPRYGYVYDRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10006214 [exp]	0	1
AT2G16630			Pollen Ole e 1 allergen and ex...		Lus10026279 [exp]	1.0	0.9791
AT3G26510			Octicosapeptide/Phox/Bem1p fam...		Lus10036862 [exp]	3.3	0.9240
AT2G23110			Late embryogenesis abundant pr...		Lus10042745 [exp]	7.7	0.9090
AT3G19550			unknown protein		Lus10002114 [exp]	8.3	0.9380
AT2G23110			Late embryogenesis abundant pr...		Lus10029709 [exp]	8.4	0.9252
AT3G19550			unknown protein		Lus10013901 [exp]	9.4	0.9355
AT4G19510			Disease resistance protein (TI...		Lus10008318 [exp]	11.1	0.8470
AT1G29010			unknown protein		Lus10013977 [exp]	13.0	0.9400
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10018087 [exp]	17.9	0.8728
AT4G32110			Beta-1,3-N-Acetylglucosaminylt...		Lus10042384 [exp]	19.4	0.9095

Compare expression of checked genes

Lus10006214 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.