Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56720 599 / 0 Protein kinase superfamily protein (.1.2.3) AT5G18500 577 / 0 Protein kinase superfamily protein (.1.2) AT1G09440 571 / 0 Protein kinase superfamily protein (.1) AT2G42960 564 / 0 Protein kinase superfamily protein (.1) AT3G59110 558 / 0 Protein kinase superfamily protein (.1) AT3G17420 529 / 0 GPK1 glyoxysomal protein kinase 1 (.1) AT1G01540 464 / 2e-161 Protein kinase superfamily protein (.1.2) AT4G01330 456 / 2e-158 Protein kinase superfamily protein (.1.2) AT4G02630 447 / 7e-155 Protein kinase superfamily protein (.1) AT4G34500 435 / 8e-151 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036863 [exp] 683 / 0 AT1G56720 580 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001055 [exp] 593 / 0 AT3G59110 766 / 0.0 Protein kinase superfamily protein (.1) Lus10001423 [exp] 591 / 0 AT3G59110 763 / 0.0 Protein kinase superfamily protein (.1) Lus10020747 [exp] 563 / 0 AT3G59110 737 / 0.0 Protein kinase superfamily protein (.1) Lus10029788 [exp] 559 / 0 AT3G59110 734 / 0.0 Protein kinase superfamily protein (.1) Lus10018722 [exp] 456 / 1e-157 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10024813 [exp] 454 / 3e-157 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10036386 [exp] 451 / 2e-156 AT1G01540 748 / 0.0 Protein kinase superfamily protein (.1.2) Lus10007919 [exp] 449 / 9e-156 AT1G01540 751 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G003300 [exp] 670 / 0 AT1G56720 712 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G003700 [exp] 652 / 0 AT1G56720 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.010G001600 [exp] 612 / 0 AT5G18500 635 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G214200 [exp] 603 / 0 AT5G18500 659 / 0.0 Protein kinase superfamily protein (.1.2) Potri.002G059000 [exp] 589 / 0 AT3G59110 704 / 0.0 Protein kinase superfamily protein (.1) Potri.005G203300 [exp] 583 / 0 AT3G59110 686 / 0.0 Protein kinase superfamily protein (.1) Potri.014G026100 [exp] 457 / 2e-158 AT4G02630 608 / 0.0 Protein kinase superfamily protein (.1) Potri.014G088800 [exp] 446 / 2e-154 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G154000 [exp] 435 / 3e-150 AT4G34500 564 / 0.0 Protein kinase superfamily protein (.1) Potri.009G115600 [exp] 435 / 5e-150 AT4G34500 553 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006215 pacid=23139682 polypeptide=Lus10006215 locus=Lus10006215.g ID=Lus10006215.BGIv1.0 annot-version=v1.0 ATGGCGGCCGATCTGAAAACCGAGATGTCGAGGAAGACTGGGATCTTCGGTCTGCAAGTGTGGGAGATCATCTGCATATGTGTAGCCATTTTCGTCATTG TAATCTTGCACCTTGGGGTGGCTAAGAAGAATAAGAATGTTAATGGTAATGGTGCTGATAAGGCGAGTAGCCATGGAAGTTCGTTTCATCACCATGAGAA GGAACTCCATGGGGATCAAGAGGAATGTAGCTCGGCAGGTCGATGCACCTCTGCTCATATCACTGCTCCTTCTCCATTGAACGGCCTCCCTGAGTTCTCT CAATTGGGGTGGGGGCATTGGTTTACCCTTAGGGATCTCGAATTGGCTACTAATCGCTTCTCTAAGGACAATGTGCTTGGCGAGGGTGGCTATGGAGTTG TTTATCGTGGACATCTCGTCAATGGCTCCCCTGTTGCTGTCAAGAAGATTCTAAACAATCTGGGTCAAGCTGAGAAGGAGTTCAGAGTCGAAGTTGAAGC AATTGGGCATGTGCGACATAAGAATTTGGTTCGTCTTCTTGGTTATTGCATCGAAGGCACTCATAGGATGTTGGTGTACGAGTATGTGAACAATGGGAAC TTGGAACAGTGGCTTCATGGAGCTATGCGTCACCATGGATATCTTACCTGGGAGGCCCGTATGAAAGTTCTCCTAGGCACAGCTAAGGCGCTTGCTTATT TGCACGATGCCATTGAGCCGAAAGTTGTGCATCGTGACATTAAATCCAGCAATATATTAATCGACGACGACTTCAACGCCAAGGTTTCTGATTTTGGGCT GGCAAAGTTGCTTGGAGCTGGCAAAAGCCATGTCACTACTCGAGTCATGGGAACTTTCGGATATGTTGCACCTGAATACGCAAATAGTGGCCTTCTGAAC GAGAAGAGTGACGTGTATAGTTTCGGAGTTGTGCTGTTAGAAGCAATCACCGGAAGAGATCCGGTAGACTATGGTCGTTCCTCGCAGGAGGTTAATCTCG TCGATTGGCTGAAAATGATGGTTGGCAACCGAAGGTCAGAGGAAGTCGTCGATCCAAACATTGAGAGGAGGCCATCAACAAGAAGTCTTAAGAGAGCCCT GTTGACCGCCTTGAGATGCGTGGACCCCGACTCTGAGAAACGACCCAAGATGGGGCAAGTCGTGCGAATGCTCGAGTCCGAAGAGTACCCCATCCCACGA GAGGATCGTAGGCAGCGAAGAGCTCATGGTGGCAACAGCATCGAGACAGAATCCCAGAAGGAGAACTCGGATAGCGACTTCCCATTAGCAGCAGCAGGGG ACAGCTCGAGAAGATTGTAA
AA sequence Show only first row Show all	>Lus10006215 pacid=23139682 polypeptide=Lus10006215 locus=Lus10006215.g ID=Lus10006215.BGIv1.0 annot-version=v1.0 MAADLKTEMSRKTGIFGLQVWEIICICVAIFVIVILHLGVAKKNKNVNGNGADKASSHGSSFHHHEKELHGDQEECSSAGRCTSAHITAPSPLNGLPEFS QLGWGHWFTLRDLELATNRFSKDNVLGEGGYGVVYRGHLVNGSPVAVKKILNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRMLVYEYVNNGN LEQWLHGAMRHHGYLTWEARMKVLLGTAKALAYLHDAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGAGKSHVTTRVMGTFGYVAPEYANSGLLN EKSDVYSFGVVLLEAITGRDPVDYGRSSQEVNLVDWLKMMVGNRRSEEVVDPNIERRPSTRSLKRALLTALRCVDPDSEKRPKMGQVVRMLESEEYPIPR EDRRQRRAHGGNSIETESQKENSDSDFPLAAAGDSSRRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56720			Protein kinase superfamily pro...		Lus10006215 [exp]	0	1
AT1G56720			Protein kinase superfamily pro...		Lus10036863 [exp]	3.0	0.9040
AT2G27740			Family of unknown function (DU...		Lus10019529 [exp]	8.3	0.8632
AT2G46225		ABIL1, ABI1L1	ABI-1-like 1 (.1.2.3)		Lus10008737 [exp]	10.0	0.8733
AT3G61260			Remorin family protein (.1)		Lus10039215 [exp]	14.0	0.8038
AT1G63300			Myosin heavy chain-related pro...		Lus10001482 [exp]	19.4	0.8567
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Lus10039978 [exp]	32.1	0.8561
AT1G70670		AtCLO4	Arabidopsis thaliana caleosin ...		Lus10034325 [exp]	35.1	0.8508
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10021238 [exp]	41.4	0.8081
AT5G62930			SGNH hydrolase-type esterase s...		Lus10027675 [exp]	50.3	0.7526
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10024651 [exp]	52.6	0.8109

Compare expression of checked genes

Lus10006215 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.