Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24430 135 / 4e-37 HXXXD-type acyl-transferase family protein (.1) AT3G26040 111 / 7e-28 HXXXD-type acyl-transferase family protein (.1) AT3G30280 108 / 7e-27 HXXXD-type acyl-transferase family protein (.1) AT4G15390 108 / 9e-27 HXXXD-type acyl-transferase family protein (.1) AT5G47950 106 / 2e-26 HXXXD-type acyl-transferase family protein (.1) AT1G24420 105 / 8e-26 HXXXD-type acyl-transferase family protein (.1) AT5G23970 84 / 2e-18 HXXXD-type acyl-transferase family protein (.1) AT5G47980 72 / 5e-14 HXXXD-type acyl-transferase family protein (.1) AT5G41040 64 / 2e-11 HXXXD-type acyl-transferase family protein (.1.2) AT5G48930 59 / 1e-09 HCT hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036868 [exp] 201 / 5e-64 AT3G26040 146 / 4e-41 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 119 / 1e-30 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10013231 [exp] 112 / 5e-28 AT3G26040 291 / 5e-94 HXXXD-type acyl-transferase family protein (.1) Lus10036819 [exp] 109 / 3e-27 AT3G26040 256 / 1e-80 HXXXD-type acyl-transferase family protein (.1) Lus10019183 [exp] 107 / 2e-26 AT3G26040 265 / 3e-84 HXXXD-type acyl-transferase family protein (.1) Lus10025730 [exp] 100 / 5e-25 AT4G15390 123 / 2e-32 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 101 / 2e-24 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1) Lus10017925 [exp] 101 / 3e-24 AT3G26040 264 / 1e-83 HXXXD-type acyl-transferase family protein (.1) Lus10036042 [exp] 99 / 4e-24 AT4G15390 151 / 1e-42 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G053800 [exp] 172 / 7e-51 AT1G24430 425 / 6e-147 HXXXD-type acyl-transferase family protein (.1) Potri.010G054002 [exp] 169 / 9e-50 AT1G24430 426 / 3e-147 HXXXD-type acyl-transferase family protein (.1) Potri.008G180400 [exp] 125 / 2e-33 AT3G26040 383 / 4e-130 HXXXD-type acyl-transferase family protein (.1) Potri.007G139400 [exp] 118 / 6e-31 AT3G26040 252 / 7e-80 HXXXD-type acyl-transferase family protein (.1) Potri.001G310000 [exp] 119 / 7e-31 AT3G26040 249 / 5e-78 HXXXD-type acyl-transferase family protein (.1) Potri.010G054100 [exp] 119 / 1e-30 AT3G26040 397 / 1e-135 HXXXD-type acyl-transferase family protein (.1) Potri.002G010700 [exp] 117 / 3e-30 AT3G26040 306 / 3e-100 HXXXD-type acyl-transferase family protein (.1) Potri.010G056450 [exp] 116 / 8e-30 AT3G26040 350 / 3e-117 HXXXD-type acyl-transferase family protein (.1) Potri.010G056400 [exp] 115 / 2e-29 AT3G26040 354 / 5e-119 HXXXD-type acyl-transferase family protein (.1) Potri.006G010300 [exp] 113 / 8e-29 AT3G26040 294 / 2e-95 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10006219 pacid=23139699 polypeptide=Lus10006219 locus=Lus10006219.g ID=Lus10006219.BGIv1.0 annot-version=v1.0 ATGCAGCTTGAAGTGCTAGTGGTTTCCAAAGAGACCATCACCCCATCTCATCAAACACCAAACAATCTCCACATCTACAACCTCTCATTTCCTTATCAGA TCGCTCCACCGGTGTACAACCCTCTGGTACTCTTCTACAACAACACTAACAATAATGGCTCCCATGCTCAAACATCAAAGCTCCTCAAGGAGTCCTTGTC CAAGCTCCTCTCACTTTACTACCCTCTAGCAGGCCGGATCAATGATACCAACTCGTTCGTCACCTGCAACGATGAGGGGATCCCTTATCTCGAAACCGAA GTGGACTCCCAAATTGCTGATGTCCTTAGGAAAGCAGAACCAAATGAACTCAACAAATTGGTCCCGTTTCAACTCCACGATGCTGGAGAAGTTGCGTTGT TAGGCGTGCAATTGAATAAGTTTCGATGTGGTAGAATCGCCATTGGAATGTGCATGTCTCACAAGGTTGCAGATGCATCATCCACCATCTCATTTGTTAA AGCTGATGATGCGGTTCTGACTCCGGAATTTGTGTCTGGTGAGCTTTTCCCACCCCTCAGAGGGGCTGAGCTGACCTGGATTTGCATCGTTATCAAAAAC TTGAAAGTAAAGAAATTTCAAGTTGGGGAAATTAGAATCGTCGATATCCAAGCTACGAATCCGGGAAATCGAACCCAAACTCAATGTCTCAAGAAGAGGA GTATTAGCCAGAAAGCTTGGAAAACTCTCTTCACTAACCCGGACGTGAGAGAGAGTGAGTTCTTGAAGATCGTAACGACAACCTTTGTAACAGCGAAATC CGCTTAG
AA sequence Show only first row Show all	>Lus10006219 pacid=23139699 polypeptide=Lus10006219 locus=Lus10006219.g ID=Lus10006219.BGIv1.0 annot-version=v1.0 MQLEVLVVSKETITPSHQTPNNLHIYNLSFPYQIAPPVYNPLVLFYNNTNNNGSHAQTSKLLKESLSKLLSLYYPLAGRINDTNSFVTCNDEGIPYLETE VDSQIADVLRKAEPNELNKLVPFQLHDAGEVALLGVQLNKFRCGRIAIGMCMSHKVADASSTISFVKADDAVLTPEFVSGELFPPLRGAELTWICIVIKN LKVKKFQVGEIRIVDIQATNPGNRTQTQCLKKRSISQKAWKTLFTNPDVRESEFLKIVTTTFVTAKSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10006219 [exp]	0	1
AT1G74830			Protein of unknown function, D...		Lus10036656 [exp]	3.6	0.8037
					Lus10004506 [exp]	9.5	0.6986
AT1G69800			Cystathionine beta-synthase (C...		Lus10013265 [exp]	11.0	0.7757
AT5G65550			UDP-Glycosyltransferase superf...		Lus10028864 [exp]	12.3	0.7937
AT5G24860		ATFPF1, FPF1	ARABIDOPSIS FLOWERING PROMOTIN...		Lus10037510 [exp]	13.9	0.7701
AT2G32750			Exostosin family protein (.1)		Lus10007426 [exp]	15.8	0.7472
AT5G24090		ATCHIA	chitinase A (.1)		Lus10040420 [exp]	19.2	0.7682
AT1G74830			Protein of unknown function, D...		Lus10033123 [exp]	23.7	0.7619
AT1G29380			Carbohydrate-binding X8 domain...		Lus10025379 [exp]	24.0	0.7665
AT2G22590			UDP-Glycosyltransferase superf...		Lus10043446 [exp]	26.7	0.7470

Compare expression of checked genes

Lus10006219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.