Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48320 202 / 2e-67 Thioesterase superfamily protein (.1) AT5G48950 170 / 7e-55 Thioesterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011142 [exp] 199 / 3e-66 AT1G48320 203 / 4e-68 Thioesterase superfamily protein (.1) Lus10043043 [exp] 167 / 3e-53 AT1G48320 151 / 4e-47 Thioesterase superfamily protein (.1) Lus10036869 [exp] 145 / 1e-45 AT1G48320 124 / 1e-37 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G003800 [exp] 212 / 4e-71 AT1G48320 170 / 1e-54 Thioesterase superfamily protein (.1) Potri.010G003600 [exp] 190 / 1e-62 AT1G48320 197 / 1e-65 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10006220 pacid=23139685 polypeptide=Lus10006220 locus=Lus10006220.g ID=Lus10006220.BGIv1.0 annot-version=v1.0 ATGGGTCATCCATCAGCACCATCAAAAACAGAACTCCTAGATGCCCCTCTCAACTTGTTGGGGTTCGAAATCGAAGAGTTGTCACCAAGCAAGGTGACTG GACGCCTTCTGGTTACTGAAAAGTGCGTGCAGCCGTTCAAAGTGCTGCACGGAGGAGTATCGGCATTGATGGCCGAGTCGCTAGCTAGCATGGGAGCACA TATGTCATCAGGTTACAAAAGGGTCGCTGGCATTCACCTCAGCATTAGTCATTTGAAGAAGGCTAACCTTGGGGACCTTGTTCTTGCCGAAGCCACCCCC ATCACTGTTGGCAAGACCATTCAGGTGTGGGAGGTGCAAATCTGGAAAGTTGATCCATCAAGCACAGACAGCAGCAGCAAGTCCTTGATTTCATCATCTC GAGTCACTCTCCTAAGCAACATGCCGGTGCCTGAGCACGCCAAAGATGCTGCCGAAAATCTCAAAAGATACGCAAAATTGTGA
AA sequence Show only first row Show all	>Lus10006220 pacid=23139685 polypeptide=Lus10006220 locus=Lus10006220.g ID=Lus10006220.BGIv1.0 annot-version=v1.0 MGHPSAPSKTELLDAPLNLLGFEIEELSPSKVTGRLLVTEKCVQPFKVLHGGVSALMAESLASMGAHMSSGYKRVAGIHLSISHLKKANLGDLVLAEATP ITVGKTIQVWEVQIWKVDPSSTDSSSKSLISSSRVTLLSNMPVPEHAKDAAENLKRYAKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48320			Thioesterase superfamily prote...		Lus10006220 [exp]	0	1
AT1G78620			Protein of unknown function DU...		Lus10005554 [exp]	1.4	0.8219
AT4G28030			Acyl-CoA N-acyltransferases (N...		Lus10019975 [exp]	3.3	0.8363
AT4G29070			Phospholipase A2 family protei...		Lus10030011 [exp]	7.4	0.7587
AT5G43260			chaperone protein dnaJ-related...		Lus10015783 [exp]	11.3	0.7645
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Lus10042863 [exp]	11.7	0.7241
AT2G35200			unknown protein		Lus10036051 [exp]	12.1	0.7654
AT3G26100			Regulator of chromosome conden...		Lus10011399 [exp]	13.4	0.7533
AT5G48545		HINT3	histidine triad nucleotide-bin...		Lus10025883 [exp]	14.0	0.7563
AT5G10260		AtRABH1e	RAB GTPase homolog H1E (.1)		Lus10014336 [exp]	17.3	0.6689
AT1G71480			Nuclear transport factor 2 (NT...		Lus10041048 [exp]	23.9	0.7983

Compare expression of checked genes

Lus10006220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.