Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15910 141 / 7e-37 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 135 / 1e-34 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G13790 117 / 2e-28 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT1G80790 115 / 6e-28 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT3G48670 112 / 8e-27 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT3G29375 105 / 2e-25 XH domain-containing protein (.1.2) AT3G12550 98 / 4e-22 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT4G01780 97 / 8e-22 XH/XS domain-containing protein (.1) AT5G59390 96 / 1e-21 XH/XS domain-containing protein (.1) AT4G01180 95 / 5e-21 XH/XS domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036870 [exp] 610 / 0 AT1G15910 160 / 7e-44 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10037986 [exp] 152 / 1e-40 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10009217 [exp] 149 / 1e-39 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10040288 [exp] 127 / 4e-33 AT1G15910 185 / 5e-53 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10040287 [exp] 127 / 5e-33 AT1G15910 164 / 4e-45 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10002703 [exp] 128 / 3e-32 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000948 [exp] 116 / 1e-30 AT3G12550 193 / 2e-58 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) Lus10026076 [exp] 121 / 7e-30 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10000951 [exp] 120 / 1e-29 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181000 [exp] 154 / 2e-41 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Potri.010G202700 [exp] 137 / 3e-35 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 113 / 3e-27 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03469 [flax] [poplar] XH XH domain
Representative CDS sequence Show only first row Show all	>Lus10006221 pacid=23139733 polypeptide=Lus10006221 locus=Lus10006221.g ID=Lus10006221.BGIv1.0 annot-version=v1.0 ATGGCCGACTACGACGCTCTCGAGGAACTGAGGATAGCTCGGAGCCAGGGAGCGAACCTGGCAAGGGCAATTGATTCCAGGAACAAAAAGTTGATGAAAC TGGAGAAGAAGTGTGATGGCTACGAAAGTGAGTCAACAGCTCTGGCCTGGGTGAAACCTGAGAATGCTAGGCTTCTCCAAGCACAAACTGAAGGTATATA TCTTCTGAGTTTGGACTCCTTGAAGGGTTTCATTTCCGATCAAGATCATTGGCTGTGTTGTACTGTAACCATGTGGACTTCTATGATTACTCTCTCTGGT TCCAGAGAATTTGAGTTACTCAAGGATTGGAATGAGAGACTGAAATATGATTTGGGTTATCAGAGGAATGCGATTGGGAGGCTAGAGGAGGAAGTGGCTC GCAGCAACCTGGAGAATGAGAAGCTGATATGCAATTTAGATTCTCAAAGAAACGTAATTCAGAAGCTAGAGAAGGAAGTGGCTTGCTGGAACCGGGAGAA TGAAAGGCTGAAATCCAATTTGGATTCTCAAAAGAATGAAATTCAGAAGCTAGAGAAGGAAGTAGATCGCACCAACCTCGAGACGGGAAAGTTGAAGGCA GAATGTGATGAGCTGAGGGAACAACTGATGGCGAAACAATGGGCATTGAACTCTATGGAGGACTTCAGCAAAGGTCTTGCCGTTTCGGACTTTGCATCCA ACACAGAGTTACAAGATGCTCGCCAAGAATTAAAACATGGGTTGGCTGATCTTTTGGATGGTGAACGAACAATCGGCATCAGGTACATGGGGGAAATCAA TCCCAAAGCTTTCGAACAAGTTTGCTGCGAGAGATTCCCCAACGACTCGGAGGCTAAAGTGATGGAGTTGTGCTCATCATGGCAGTCAGAACTCAGCAAG TCAATATGGCATCCCTTCAAGCAGGCACACGTTGATGGGAAATTGCAGGAAGTAATAGATGACAACGATCCGAAGCTGGAGAAGTTGAGGATGGAATGGG GAGAGGAGCCTTTCATGGCGGTAGGGAAAGCATTAACGGAGTTGAACGAGTACAATGCAGTTCCTGAAATGTGGAACTTTGATGCTGGAAGAAAAGCCAC GTTGAAAGAGGTAATCAAGTGTGTCCTTCACCGGCTCAAGACCTAA
AA sequence Show only first row Show all	>Lus10006221 pacid=23139733 polypeptide=Lus10006221 locus=Lus10006221.g ID=Lus10006221.BGIv1.0 annot-version=v1.0 MADYDALEELRIARSQGANLARAIDSRNKKLMKLEKKCDGYESESTALAWVKPENARLLQAQTEGIYLLSLDSLKGFISDQDHWLCCTVTMWTSMITLSG SREFELLKDWNERLKYDLGYQRNAIGRLEEEVARSNLENEKLICNLDSQRNVIQKLEKEVACWNRENERLKSNLDSQKNEIQKLEKEVDRTNLETGKLKA ECDELREQLMAKQWALNSMEDFSKGLAVSDFASNTELQDARQELKHGLADLLDGERTIGIRYMGEINPKAFEQVCCERFPNDSEAKVMELCSSWQSELSK SIWHPFKQAHVDGKLQEVIDDNDPKLEKLRMEWGEEPFMAVGKALTELNEYNAVPEMWNFDAGRKATLKEVIKCVLHRLKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10006221 [exp]	0	1
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10036870 [exp]	4.7	0.8683
AT1G14770			RING/FYVE/PHD zinc finger supe...		Lus10015562 [exp]	6.2	0.8534
AT1G50910			unknown protein		Lus10043058 [exp]	9.5	0.8177
AT4G01590			unknown protein		Lus10006847 [exp]	10.1	0.7801
AT5G06350			ARM repeat superfamily protein...		Lus10004194 [exp]	10.5	0.8350
AT1G70150			zinc ion binding (.1)		Lus10010722 [exp]	12.0	0.7824
AT4G03500			Ankyrin repeat family protein ...		Lus10026833 [exp]	14.3	0.7921
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10001223 [exp]	17.1	0.8129
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	24.5	0.7615
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10020784 [exp]	25.1	0.8010

Compare expression of checked genes

Lus10006221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.