Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67820 338 / 8e-113 Protein phosphatase 2C family protein (.1) AT2G40180 218 / 1e-66 ATHPP2C5 phosphatase 2C5 (.1) AT2G30020 218 / 2e-66 Protein phosphatase 2C family protein (.1) AT1G07160 213 / 9e-65 Protein phosphatase 2C family protein (.1) AT4G31750 150 / 7e-42 WIN2 HOPW1-1-interacting 2 (.1) AT5G24940 145 / 1e-38 Protein phosphatase 2C family protein (.1) AT4G08260 139 / 1e-38 Protein phosphatase 2C family protein (.1) AT1G43900 142 / 3e-38 Protein phosphatase 2C family protein (.1) AT5G10740 140 / 7e-38 Protein phosphatase 2C family protein (.1) AT5G53140 129 / 4e-33 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036871 [exp] 635 / 0 AT1G67820 380 / 1e-129 Protein phosphatase 2C family protein (.1) Lus10042275 [exp] 207 / 9e-63 AT1G07160 392 / 1e-135 Protein phosphatase 2C family protein (.1) Lus10026381 [exp] 204 / 2e-61 AT1G07160 390 / 4e-135 Protein phosphatase 2C family protein (.1) Lus10041072 [exp] 170 / 3e-49 AT1G07160 238 / 3e-76 Protein phosphatase 2C family protein (.1) Lus10026239 [exp] 147 / 5e-41 AT4G31750 454 / 3e-163 HOPW1-1-interacting 2 (.1) Lus10042430 [exp] 146 / 7e-41 AT4G31750 452 / 2e-162 HOPW1-1-interacting 2 (.1) Lus10020104 [exp] 142 / 9e-39 AT4G31750 523 / 0.0 HOPW1-1-interacting 2 (.1) Lus10026908 [exp] 141 / 2e-38 AT4G31750 484 / 1e-174 HOPW1-1-interacting 2 (.1) Lus10014926 [exp] 137 / 1e-36 AT5G53140 448 / 3e-158 Protein phosphatase 2C family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G047600 [exp] 427 / 6e-148 AT1G67820 399 / 2e-136 Protein phosphatase 2C family protein (.1) Potri.001G278500 [exp] 231 / 8e-72 AT2G30020 451 / 2e-158 Protein phosphatase 2C family protein (.1) Potri.009G073000 [exp] 230 / 3e-71 AT2G30020 466 / 9e-164 Protein phosphatase 2C family protein (.1) Potri.008G070400 [exp] 223 / 1e-68 AT2G40180 365 / 1e-124 phosphatase 2C5 (.1) Potri.010G187000 [exp] 214 / 5e-65 AT2G30020 381 / 6e-131 Protein phosphatase 2C family protein (.1) Potri.013G099400 [exp] 195 / 3e-57 AT1G07160 272 / 1e-87 Protein phosphatase 2C family protein (.1) Potri.019G071600 [exp] 190 / 2e-55 AT1G07160 268 / 8e-86 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 151 / 3e-42 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1) Potri.018G013900 [exp] 150 / 5e-42 AT4G31750 533 / 0.0 HOPW1-1-interacting 2 (.1) Potri.002G074500 [exp] 139 / 1e-37 AT1G43900 429 / 1e-151 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10006222 pacid=23139706 polypeptide=Lus10006222 locus=Lus10006222.g ID=Lus10006222.BGIv1.0 annot-version=v1.0 ATGAATGGATTGACCCGCTCACTGGCTTCTCTGTCCGAACTTATAGCCGTTGAGCAGTTCTTCACATTGGAAAAAAGTAGAGATCGAATGGGTCAGAAAA TGGAGGCGAATTTCCCCAATTCAGCCCTAAAGCTACCATCTTTATCTTCTTCCCTGAAGCGGAAGCGGCCGCCTATGATCGAGATTCCAACTGTACTTCA AGAAATCAGCTTACAAACTCCCAAGTTCAGGAATCCCTTCGTTGGGCCGGCAGCAACCGGCGACGGCGGCGTCGTTTCATCTTCTGGGAAAGGCTTCGCC GTCTCTGCTGTTAAGGGGAAGAAGAAGTTCATGGAAGATTCCCACAAGATCGTCTCTTGCTTGAATGGCTGCTCCCGCAATGGTTTCTTCGGGGTTTATG ATGGGCATGGCGGGAAGAAAGCTGCGGAGTTTGCTGCGGAGAATTTGCATTGTAATATTATGGAAATGATGGAGAGTCGTGGTGATGAAGTTTGTAAAGA GGAAGCTGTAAAAGCTGGTTATTTAAAGACTGATCAACAGTTCCTGGATCAGGGTTTGGTGAGTGGTGCTTGCTGTGTGACGGCCTTGATCGAAGGGGAC GAGATGGTTGTTTCGAATTTGGGAGATTGCAGGGCGGTTCTTTGTCAAGGTGGAGTTGCCGAAGCGCTTACTACCGATCATAGGGCAGAAAGGGAGGACG AAAGGGAAAGAATAGAGAATCTGGGAGGATACGTTGAGATCCATCGAGGGGCATGGAGAGTTCATGGGATACTTTCGGTGTCGAGGAGCATTGGAGATGC ACATCTCAAGGCGTGGGTCTCGGCTGAACCAGATACAAAGATTCTGCAGCTGGACAACATGGAGTTTCTTGTCTTGGCTTCTGATGGACTATGGGAAGTG GTTGGGAATCAAGAAGCTGTTGACCTTGTGACTAAATTATGTAGAGAGGACGCAATCGAGTGTGGACTCGTTAATGTAAGTCCTTCCCCGAAACTGCGAA GGGTTTCGCTGGTGAAGCAACACCAAACATTACAGAAGGAGGCCATTGAAGGTTGCTGCCAAGAAGAAGATGACGGGTTTCCAAGCGAAAACGACGCTCC TCCTCCTCCTTTGAAGTCGAGACGGATTAATCTGGTCAAGAAGATAAACACGAAGATAGAGTCTCCTAACAAAGAGAACAACAAGCTATCTCCTTCGTCC ACAGGGGGGATTGCTAGTGCCTGCAAGGAGCTGGTGAGCCTTGCTGTTAGTAGAGGTAGTTTGGATGATATAACTGTGATGATAATTGATCTCAGTTACT TCCGAAACAAGCAAGCAACGTGA
AA sequence Show only first row Show all	>Lus10006222 pacid=23139706 polypeptide=Lus10006222 locus=Lus10006222.g ID=Lus10006222.BGIv1.0 annot-version=v1.0 MNGLTRSLASLSELIAVEQFFTLEKSRDRMGQKMEANFPNSALKLPSLSSSLKRKRPPMIEIPTVLQEISLQTPKFRNPFVGPAATGDGGVVSSSGKGFA VSAVKGKKKFMEDSHKIVSCLNGCSRNGFFGVYDGHGGKKAAEFAAENLHCNIMEMMESRGDEVCKEEAVKAGYLKTDQQFLDQGLVSGACCVTALIEGD EMVVSNLGDCRAVLCQGGVAEALTTDHRAEREDERERIENLGGYVEIHRGAWRVHGILSVSRSIGDAHLKAWVSAEPDTKILQLDNMEFLVLASDGLWEV VGNQEAVDLVTKLCREDAIECGLVNVSPSPKLRRVSLVKQHQTLQKEAIEGCCQEEDDGFPSENDAPPPPLKSRRINLVKKINTKIESPNKENNKLSPSS TGGIASACKELVSLAVSRGSLDDITVMIIDLSYFRNKQAT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67820			Protein phosphatase 2C family ...		Lus10006222 [exp]	0	1
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10021611 [exp]	1.4	0.9628
AT5G12360			unknown protein		Lus10038810 [exp]	3.5	0.9615
AT5G56120			unknown protein		Lus10008355 [exp]	4.0	0.9540
AT5G66230			Chalcone-flavanone isomerase f...		Lus10014261 [exp]	4.6	0.9607
AT4G01730			DHHC-type zinc finger family p...		Lus10009971 [exp]	5.0	0.9576
AT5G12930			unknown protein		Lus10031827 [exp]	5.4	0.9386
AT1G67820			Protein phosphatase 2C family ...		Lus10036871 [exp]	6.6	0.9440
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Lus10037691 [exp]	8.2	0.9596
AT4G14330			P-loop containing nucleoside t...		Lus10021167 [exp]	9.2	0.9550
AT5G56120			unknown protein		Lus10027112 [exp]	9.8	0.9373

Compare expression of checked genes

Lus10006222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.