Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12690 214 / 1e-68 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) AT5G48270 209 / 3e-66 Plant protein of unknown function (DUF868) (.1) AT2G04220 202 / 1e-63 Plant protein of unknown function (DUF868) (.1) AT5G28150 174 / 6e-53 Plant protein of unknown function (DUF868) (.1) AT3G04860 166 / 3e-50 Plant protein of unknown function (DUF868) (.1) AT3G13229 151 / 3e-44 Plant protein of unknown function (DUF868) (.1) AT5G11000 108 / 2e-27 Plant protein of unknown function (DUF868) (.1) AT2G27770 106 / 8e-27 Plant protein of unknown function (DUF868) (.1) AT2G25200 106 / 9e-27 Plant protein of unknown function (DUF868) (.1) AT2G36470 60 / 4e-10 Plant protein of unknown function (DUF868) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036872 [exp] 495 / 1e-179 AT4G12690 202 / 2e-64 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Lus10019467 [exp] 254 / 3e-84 AT2G04220 220 / 2e-70 Plant protein of unknown function (DUF868) (.1) Lus10043317 [exp] 254 / 5e-84 AT2G04220 216 / 1e-68 Plant protein of unknown function (DUF868) (.1) Lus10039183 [exp] 209 / 2e-66 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10013755 [exp] 205 / 1e-64 AT2G04220 351 / 2e-121 Plant protein of unknown function (DUF868) (.1) Lus10027127 [exp] 173 / 2e-52 AT2G04220 263 / 4e-87 Plant protein of unknown function (DUF868) (.1) Lus10032896 [exp] 172 / 3e-52 AT2G04220 264 / 1e-87 Plant protein of unknown function (DUF868) (.1) Lus10001787 [exp] 152 / 2e-44 AT5G28150 357 / 2e-124 Plant protein of unknown function (DUF868) (.1) Lus10020240 [exp] 147 / 2e-42 AT5G28150 356 / 2e-124 Plant protein of unknown function (DUF868) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G047700 [exp] 337 / 1e-116 AT5G48270 223 / 3e-71 Plant protein of unknown function (DUF868) (.1) Potri.015G084500 [exp] 311 / 3e-106 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.012G089100 [exp] 300 / 7e-102 AT4G12690 254 / 1e-83 Plant protein of unknown function (DUF868) (.1), Plant protein of unknown function (DUF868) (.2) Potri.005G068100 [exp] 219 / 3e-70 AT2G04220 385 / 4e-135 Plant protein of unknown function (DUF868) (.1) Potri.007G101000 [exp] 204 / 2e-64 AT2G04220 369 / 7e-129 Plant protein of unknown function (DUF868) (.1) Potri.001G467500 [exp] 197 / 7e-62 AT2G04220 270 / 5e-90 Plant protein of unknown function (DUF868) (.1) Potri.013G038000 [exp] 174 / 4e-53 AT5G28150 409 / 6e-145 Plant protein of unknown function (DUF868) (.1) Potri.005G050900 [exp] 174 / 6e-53 AT5G28150 417 / 2e-148 Plant protein of unknown function (DUF868) (.1) Potri.002G051600 [exp] 157 / 2e-46 AT5G28150 364 / 2e-127 Plant protein of unknown function (DUF868) (.1) Potri.005G210800 [exp] 155 / 7e-46 AT5G28150 359 / 2e-125 Plant protein of unknown function (DUF868) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05910 [flax] [poplar] DUF868 Plant protein of unknown function (DUF868)
Representative CDS sequence Show only first row Show all	>Lus10006223 pacid=23139725 polypeptide=Lus10006223 locus=Lus10006223.g ID=Lus10006223.BGIv1.0 annot-version=v1.0 ATGCATGATTCAATAGGAATCCCAGCCTGCTTCACCTCGAACGACGAGCCACCAGCAGCCACCATGATCACAAGACCAGGACAGGCAGTTTTCATGTCAG TTTACAATACCAACATAGCAGGGAAGCACCGTCTGATCACCATAACATGGTGCAAGAAGAAGAACCTGATGCTACACACCCTCTCCATATCGGTGCAAGG CCAGCACGAGTTCAAAATCGAGATAAAGCCATGGTCTTTCTGGCGCAAACACGGTGCCAAGCAGTTCGAAATCGAGGGCAAGGCAGTGGAAGTTGTCTGG GACCTGAAATCAGCGAGGTTTGATCATGGCGAGACAGAGCCCAAGTCGGATTACTACGTAGCCATTGTGTGTGAAGAAGAAGTTGTCTTGCTACTTGGTG ACTTAAAGATTGATGCTTTCTTGAAAACAAGGTGCAGGCCTTCATTGAATGAGCCATTGCTAGTTTCAAGGAGGGAGCATGTGTTTGGGAGGAAGAGGTT TGCTACTAGGATCAGATTCCATGAGATCTCTCTGATTCATGAGTGCAGCAACAATGAGCTGGAGATACTAGTTGATGGGGAGAAAGCCATTGAAGTGAAC CATCTGCAGTGGAAGTTCAGAGGGAACATGTCAATGTTTGTGAGCAAGAACAGCAGGGTTGAGGTTTACTGGGATGTCCATGATTGGCTATTTGGCTCTG GTCCAAGACATGGCTTGTTCATATTCAAGCCAGTTGAGAATGATGATGGCGATGAGCATGGAGGGTCATCAAGCTTTTGCTTGTTTCTGTATGCTTGGAA GGTGGAATGA
AA sequence Show only first row Show all	>Lus10006223 pacid=23139725 polypeptide=Lus10006223 locus=Lus10006223.g ID=Lus10006223.BGIv1.0 annot-version=v1.0 MHDSIGIPACFTSNDEPPAATMITRPGQAVFMSVYNTNIAGKHRLITITWCKKKNLMLHTLSISVQGQHEFKIEIKPWSFWRKHGAKQFEIEGKAVEVVW DLKSARFDHGETEPKSDYYVAIVCEEEVVLLLGDLKIDAFLKTRCRPSLNEPLLVSRREHVFGRKRFATRIRFHEISLIHECSNNELEILVDGEKAIEVN HLQWKFRGNMSMFVSKNSRVEVYWDVHDWLFGSGPRHGLFIFKPVENDDGDEHGGSSSFCLFLYAWKVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12690			Plant protein of unknown funct...		Lus10006223 [exp]	0	1
AT4G12690			Plant protein of unknown funct...		Lus10036872 [exp]	1.0	0.9857
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10005557 [exp]	2.4	0.9602
AT1G22690			Gibberellin-regulated family p...		Lus10009421 [exp]	2.4	0.9767
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10003717 [exp]	4.2	0.9667
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10039222 [exp]	4.2	0.9568
AT3G61260			Remorin family protein (.1)		Lus10030379 [exp]	4.5	0.9567
AT3G59090			unknown protein		Lus10040880 [exp]	5.0	0.9629
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10011093 [exp]	5.7	0.9469
					Lus10010364 [exp]	6.8	0.9389
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012742 [exp]	7.7	0.9433

Compare expression of checked genes

Lus10006223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.