Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26430 342 / 6e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G14450 334 / 1e-107 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G27950 329 / 4e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G67830 306 / 3e-97 ATFXG1 Arabidopsis thaliana alpha-fucosidase 1, alpha-fucosidase 1 (.1) AT1G54790 278 / 2e-86 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) AT1G56670 262 / 2e-80 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G05180 252 / 1e-76 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G09390 244 / 9e-74 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G62280 241 / 1e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G01130 240 / 3e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036873 [exp] 603 / 0 AT3G26430 275 / 1e-90 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10036874 [exp] 428 / 5e-142 AT3G26400 355 / 4e-117 eukaryotic translation initiation factor 4B1 (.1) Lus10008784 [exp] 355 / 5e-116 AT3G27950 391 / 2e-135 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10032094 [exp] 340 / 4e-110 AT5G14450 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10014592 [exp] 336 / 2e-108 AT5G14450 573 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10029638 [exp] 281 / 4e-87 AT1G54790 443 / 2e-155 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029980 [exp] 279 / 1e-86 AT1G54790 578 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10029639 [exp] 278 / 1e-86 AT1G54790 421 / 4e-147 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Lus10003021 [exp] 271 / 7e-84 AT3G26430 385 / 4e-133 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G047900 [exp] 358 / 6e-117 AT3G26430 504 / 1e-179 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G342600 [exp] 351 / 2e-114 AT5G14450 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G185500 [exp] 342 / 7e-111 AT3G26430 534 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083700 [exp] 340 / 6e-110 AT3G26430 417 / 3e-145 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G177700 [exp] 332 / 4e-107 AT3G26430 407 / 2e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G083800 [exp] 330 / 4e-106 AT3G26430 405 / 8e-141 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G074400 [exp] 325 / 3e-104 AT3G26430 388 / 8e-134 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G026300 [exp] 272 / 4e-84 AT1G54790 605 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.005G038800 [exp] 270 / 3e-83 AT1G54790 595 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3) Potri.002G216000 [exp] 264 / 6e-81 AT1G54790 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase CL0264 [flax] [poplar] PF06273 [flax] [poplar] eIF-4B Plant specific eukaryotic initiation factor 4B
Representative CDS sequence Show only first row Show all	>Lus10006224 pacid=23139715 polypeptide=Lus10006224 locus=Lus10006224.g ID=Lus10006224.BGIv1.0 annot-version=v1.0 ATGTCGTTTGCGCCTCCTTCTAGGTCGTCAAATTTTGGGTTCCGTAGCTCCGGTCCGGAGAATGATCGGTGGACTAGAGGGGGAGGAGGAGGAGGAGGAA GCAATGAGGTGGAGCAGGAGAGGTCGGAGAGGCCGAGGTTGGTATTGAATCCACCGAAAGTAGATGTAGCAATAACTGTAACTGAGGTGAGTAAGACAAA CAAGCCGAACCCATTTGGGACGGCGAGGCCAAGGGAGGAGGTTTTAGCTGACAAGGGGCTGGACTGGAGGAAGCTGGAGATTGACCTTGAGTCAAAGAAG ACTTCTTCTCACTCTAGTAGGCCGACTAGTGCTCATTCGAGCAGGCCTTCTAGTGCACATTCAGGGAGGTCTGAGACTGTTCCAGCTGGATTTCTGCAGC AAGGGTTAGACAATGTGGTGAGACCTGCTAAGCCGAAGGTGAACCCTTTTGGGGATGCTAAGCCAAGAGAAGTGTTGTTGCAGGAACGAGGGCAGGACTG GCGGAAGATGGATCGTGAATTGGAGCATCGCAGTATCGACAGTACTGCATGTGAAACTAAATGCATTGATGTTTTGAAGATTCTGAAGTACCAGCAAAGT TTACCAACGCAGAGTCAAATTTATCCTAATATCCCTTGGCGGGATGAAATGTCGTATTGTTTCATTTCTGGATCTCTTGCTGACATATCCATTTCCTGGA AACATCACAGACCTGAAACTGAGGAAGAAAAATTGTTGAAAGAAGAAATCAATAAACTAAAGGAGGATGTTCAGAAGGAGCCATCGGTACAAGAGAATAA GGAACCCGTACAAGTGTCTGATGGTGATCAATCCAGCTTAAAAGAGATAATAAGTCAGAAGGAAAAGGAACTAGAAACACTGATCCTCGATCTGGATGAC AAAGTTCGATTTCGCCAGAAACCAATCGAAAGGCCTGGGTCTGGCGCTGGTAGGAGTCCTGCTTTCTCTGACAGACCACCTTCTCGATCTGGATCAGTTG ATGAATCCAGAAATACAGAGTTTATGGACCGGCCTCGCTCTCGTGGTGCACCAGATATCTGGACAAGGCCTGTTGAGGAGAGAAGACCATATCAAGGCAG CAGAGGAGAAAGAGGATTCCTGGGTAGCAGAGAATTTGACAGTAATGCTGCTCTGTCTGTAATTTTGAAACTCCAGATTCGTCTAGACAACTCGTTTACC TTCCCATCAGCATCCTGCCATGTTCCTGCAGTCTACAACTTCGGCGATTCGAACTCCGACACTGGCAGCCAGCCTGCGATATTCGGACGAGTCCCCTTCC CCAACGGGCAGACTTTCTTCGGTAAACCGTCTGGACGATACTCTGACGGCCGTATGATCATCGATTTCCTAGCTGAGAAGCTGGGACTGCCGTACTTGAG CTCGTTCCTGGATTCCTTGGAATCGAACTTCACCCACGGAGCGAATTTCGCTTCCAGTGGAGCCACCGTCCAGCCCCCCAGCGGGGCATTGTTCGACGGT GGTTTCAATCCTGTAACTTTCGAGTTCCAGGTTCTGCAGTTTCAGCAGCTTAGAGATAGAACCTTTGAGCTGGGAAAACAAGGTGGTGGATTGGTGGATC GGCTGCCGAAACTTAAGGAGTTCAAATCAGCTCTTTATATGTTGGATTGTGGGCAGAATGATCTTCACTTTGGTCTGGCTTACTTTGGTCAGCAAGGAGC ATTCTCTTCAATCCCCTTGATCATCAACAACTTTTCTCTAACCATAGAGAGACTGTATGAAGAAGGAGCAAGAACGTTTTGGATCCACAACACGGGCCCG ATCGGGTGCTTGCCATTCTTTGTGATGAGGCTCTCTCCGAAGCCTGAAGATGCAGACCCAGTTGGCTGCATCAAGTCCTACAATGAAGTGGCCACAGAGT TCAACAGACAGCTCAATGCAACGGTTTACAAGCTCAGAACCAAGTTCCCTGATGCACTCATGGTCCTTGTGGACATGTATTCCGCTAAGTACTCCCTCAT CCGTGAGGCCGATAAGTACGGTTTCGAGGACCCGTTAGGGTTCTGCTGCGGCCACTTGGGGGACTACGAGGTGAAATGTGGTAGGGAAGTCACACTAGAG AATGGAACTGTTGTTCGTGGAACTGCTTGCAGAGATCCATCGAAGTATATCAGCTGGGACAACATACATTACACTGAAGCTGCGAATCGGTGGGTTGCTG ACCGGATTTCTGATGGATCGCTGTCGGACCCTCCGATACCGATTGTTGAAGCTTGTAGCAGTGTCGCAAGCCAATATAGATGCTAG
AA sequence Show only first row Show all	>Lus10006224 pacid=23139715 polypeptide=Lus10006224 locus=Lus10006224.g ID=Lus10006224.BGIv1.0 annot-version=v1.0 MSFAPPSRSSNFGFRSSGPENDRWTRGGGGGGGSNEVEQERSERPRLVLNPPKVDVAITVTEVSKTNKPNPFGTARPREEVLADKGLDWRKLEIDLESKK TSSHSSRPTSAHSSRPSSAHSGRSETVPAGFLQQGLDNVVRPAKPKVNPFGDAKPREVLLQERGQDWRKMDRELEHRSIDSTACETKCIDVLKILKYQQS LPTQSQIYPNIPWRDEMSYCFISGSLADISISWKHHRPETEEEKLLKEEINKLKEDVQKEPSVQENKEPVQVSDGDQSSLKEIISQKEKELETLILDLDD KVRFRQKPIERPGSGAGRSPAFSDRPPSRSGSVDESRNTEFMDRPRSRGAPDIWTRPVEERRPYQGSRGERGFLGSREFDSNAALSVILKLQIRLDNSFT FPSASCHVPAVYNFGDSNSDTGSQPAIFGRVPFPNGQTFFGKPSGRYSDGRMIIDFLAEKLGLPYLSSFLDSLESNFTHGANFASSGATVQPPSGALFDG GFNPVTFEFQVLQFQQLRDRTFELGKQGGGLVDRLPKLKEFKSALYMLDCGQNDLHFGLAYFGQQGAFSSIPLIINNFSLTIERLYEEGARTFWIHNTGP IGCLPFFVMRLSPKPEDADPVGCIKSYNEVATEFNRQLNATVYKLRTKFPDALMVLVDMYSAKYSLIREADKYGFEDPLGFCCGHLGDYEVKCGREVTLE NGTVVRGTACRDPSKYISWDNIHYTEAANRWVADRISDGSLSDPPIPIVEACSSVASQYRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10006224 [exp]	0	1
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Lus10036873 [exp]	1.0	0.9664
AT4G34630			unknown protein		Lus10017493 [exp]	1.7	0.9056
AT5G60850	DOF	OBP4, AtDof5. 4	OBF binding protein 4 (.1)		Lus10007976 [exp]	5.1	0.9085
AT1G60420			DC1 domain-containing protein ...		Lus10005618 [exp]	6.3	0.8837
AT3G21890	CO		B-box type zinc finger family ...		Lus10031583 [exp]	7.2	0.8991
AT4G14690		ELIP2	EARLY LIGHT-INDUCIBLE PROTEIN ...		Lus10039379 [exp]	8.0	0.8917
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Lus10008951 [exp]	12.7	0.8934
AT5G51720			2 iron, 2 sulfur cluster bindi...		Lus10031686 [exp]	13.1	0.8901
AT2G29380		HAI3	highly ABA-induced PP2C gene 3...		Lus10003399 [exp]	13.2	0.8976
AT4G27310	CO		B-box type zinc finger family ...		Lus10031593 [exp]	13.6	0.8468

Compare expression of checked genes

Lus10006224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.