Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26380 750 / 0 Melibiase family protein (.1) AT5G08380 89 / 1e-18 ATAGAL1 alpha-galactosidase 1 (.1) AT3G56310 86 / 2e-17 Melibiase family protein (.1.2) AT5G08370 79 / 1e-15 ATAGAL2 alpha-galactosidase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036875 [exp] 870 / 0 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10011407 [exp] 480 / 7e-165 AT3G26380 476 / 3e-163 Melibiase family protein (.1) Lus10006467 [exp] 447 / 5e-153 AT3G26380 455 / 4e-156 Melibiase family protein (.1) Lus10018260 [exp] 94 / 4e-20 AT5G08370 539 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038325 [exp] 93 / 5e-20 AT5G08370 558 / 0.0 alpha-galactosidase 2 (.1.2) Lus10038305 [exp] 87 / 3e-18 AT5G08370 490 / 1e-173 alpha-galactosidase 2 (.1.2) Lus10024401 [exp] 87 / 4e-18 AT5G08370 587 / 0.0 alpha-galactosidase 2 (.1.2) Lus10036176 [exp] 87 / 7e-18 AT5G08370 521 / 0.0 alpha-galactosidase 2 (.1.2) Lus10018258 [exp] 86 / 1e-17 AT5G08370 553 / 0.0 alpha-galactosidase 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185300 [exp] 799 / 0 AT3G26380 830 / 0.0 Melibiase family protein (.1) Potri.010G048300 [exp] 776 / 0 AT3G26380 815 / 0.0 Melibiase family protein (.1) Potri.010G048400 [exp] 740 / 0 AT3G26380 772 / 0.0 Melibiase family protein (.1) Potri.010G118200 [exp] 94 / 3e-20 AT5G08370 598 / 0.0 alpha-galactosidase 2 (.1.2) Potri.018G152200 [exp] 86 / 1e-17 AT5G08370 603 / 0.0 alpha-galactosidase 2 (.1.2) Potri.010G255200 [exp] 86 / 1e-17 AT5G08380 667 / 0.0 alpha-galactosidase 1 (.1) Potri.004G038100 [exp] 86 / 1e-17 AT5G08370 522 / 0.0 alpha-galactosidase 2 (.1.2) Potri.019G056700 [exp] 83 / 1e-16 AT3G56310 681 / 0.0 Melibiase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF02065 [flax] [poplar] Melibiase Melibiase
Representative CDS sequence Show only first row Show all	>Lus10006226 pacid=23139694 polypeptide=Lus10006226 locus=Lus10006226.g ID=Lus10006226.BGIv1.0 annot-version=v1.0 ATGAAGATTTGTCTCTCCTTCTCCTGCTTCCTCTTCCTCTTCCTCGGATCTTGTCTCTCCAGGGTTTCATCATCATCGGCAGTCGGTAACCGATGTAAGC TGCCACCAAGAGGTTGGAACTCTTATGATTCCTACTGCTGGACGATTTCTGAACAGGACTTCTTGCAGAGTGCTCAAATTGTTGCCAAGTATCTAAAACA CCATGGATATGAGTATGTTGTGGTGGATTACCTTTGGTACAGAAGACTGGTACCAGGTTCCTACGTTGATGCTTTAGGGTTTGATGTGATTGATGAATGG GGGAGGATGGTTCCCGCCCCAGATCGATGGCCTTCAGCGAATTCGGGGAAAGGGTTTGCTGAAGTTGCTGATAAAGTTCATAGTTTGGGTCTTAAGTTTG GAATCCATGTCATGAGAGGATTGAGTCGGCAGGCTTATGATGCCAACACTCCTATACTGGACATTGCCACGGGGCGTGCTTACGAAGAATCTGGCCGAAA GTGGACCGCCCGAGACATAGGGATCAAGGAGAGGAGTTGTGCATGGATGCAGAATGGCTTCATGAGTGTCAACACTTCATTGCCTGCTGGAAGAGCATTC TTGAAGTCACTCTATCACCAGTATGCCGATTGGGGTGTCGATTTCATCAAACATGATTGCGTGTTTGGTGAAGACTTCAACCTTGAAGAGATCAAATTCG TGTCCGGGGTTCTAAAACAGCTCGATCGCCCTGTCGTGTACTCGCTATCCCCAGGAACTTCTGTCACACCAGCTATGGCTAACGAACTGCGCGGATTAGC AAACATGTACAGGGTAACAGCAGACGATTGGGATTCGTGGCGAGACGTGGCTTCACATTTTGATGTTTCGAGGGACTTTGCCAAAGCTAAAATGGTCCCG GCTGCAGGTTTGCTTGGGAATTCGTGGCCCGACTTAGATATGCTACCCTTAGGTTGGCTTACTGACCAAGGTTCAAATTTAGGGCCTCATAGGCAGTGTA ACCTTACTGTAGATGAGCAAAGAACTCAGATGACACTGTGGTCGATGGCAAGGTCCCCGCTCATGTTTGGAGGAGACGTTCGGAAGCTCGATATGAATAC TTACAAGCTGATCACTCACCCTACCTTGCTCGAAATCAACGATTACAGCTCAAACAATATGGAGGCATGTAAGGTCGTTGATCCCACGAGGCGATCGAGG AATTCCATGTTGAAACGTGGAAATGATCATACAAGGGTGGACATAGGTCTCACTAGTTGCAAAGATCGTAATGTGAATGGTTGGTCAGTTGAATCTCTCG ACGAGTACCAGGAACAGATATGCTGGAGAAAGGACGAGGCCAGCCAAAGAGTACCGTTATGCCTATACAAGCAAAAGCCTCTCTTATCTTCGTCCAGTGA ACATGTACTATACGGGAAAGAGAGCCGTGCATTATTCAGTAGTGATGGAATGGAGGCGTGCTTGGATGCTTCCCCGAGACATAAACGTAGCTCTAGAGAG TCGAGGAAGCCCTCTTTCTCGACCTGCAAATGGGATGCCAACCAGCAGATGTGGAAGTTGAGCAGCAATGCAACTCTCCGGAGCAGTTACTCTGGCCTCT GTGCAAAAGTAAAGCAAGTTCAAGCAACTAACGAAGCAGGGATCAGCGGGGTTCGGTCATGGATCGCGACGGGAAGACAAGGAGAAATCTATGTGGCTCT CTTCAACCTCAATACACAGAGAACACTGATCTCCACCAAGTTATCAGACATGGCCAAGGTGCTTCCTGGAAGAAACCTGGGAAGCAAAGCTGCAGCTTGT AAAGGCATGGAAGTATGGAGCGACCAACGTTACGAAACTGTGGAGGATTCGCTGGAAATGGTTGTGGATAAGCATGGTTGTGCTCTCTTTATACTGAACT GCAAGGCATAG
AA sequence Show only first row Show all	>Lus10006226 pacid=23139694 polypeptide=Lus10006226 locus=Lus10006226.g ID=Lus10006226.BGIv1.0 annot-version=v1.0 MKICLSFSCFLFLFLGSCLSRVSSSSAVGNRCKLPPRGWNSYDSYCWTISEQDFLQSAQIVAKYLKHHGYEYVVVDYLWYRRLVPGSYVDALGFDVIDEW GRMVPAPDRWPSANSGKGFAEVADKVHSLGLKFGIHVMRGLSRQAYDANTPILDIATGRAYEESGRKWTARDIGIKERSCAWMQNGFMSVNTSLPAGRAF LKSLYHQYADWGVDFIKHDCVFGEDFNLEEIKFVSGVLKQLDRPVVYSLSPGTSVTPAMANELRGLANMYRVTADDWDSWRDVASHFDVSRDFAKAKMVP AAGLLGNSWPDLDMLPLGWLTDQGSNLGPHRQCNLTVDEQRTQMTLWSMARSPLMFGGDVRKLDMNTYKLITHPTLLEINDYSSNNMEACKVVDPTRRSR NSMLKRGNDHTRVDIGLTSCKDRNVNGWSVESLDEYQEQICWRKDEASQRVPLCLYKQKPLLSSSSEHVLYGKESRALFSSDGMEACLDASPRHKRSSRE SRKPSFSTCKWDANQQMWKLSSNATLRSSYSGLCAKVKQVQATNEAGISGVRSWIATGRQGEIYVALFNLNTQRTLISTKLSDMAKVLPGRNLGSKAAAC KGMEVWSDQRYETVEDSLEMVVDKHGCALFILNCKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26380			Melibiase family protein (.1)		Lus10006226 [exp]	0	1
AT1G67900			Phototropic-responsive NPH3 fa...		Lus10000443 [exp]	3.5	0.8190
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	11.6	0.8172
AT1G27290			unknown protein		Lus10015767 [exp]	14.0	0.8029
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10033381 [exp]	15.6	0.8195
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10014409 [exp]	18.2	0.7714
AT4G03510		ATRMA1, RMA1	RING membrane-anchor 1 (.1.2)		Lus10039821 [exp]	22.7	0.8125
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10036657 [exp]	25.5	0.7797
AT5G59960			unknown protein		Lus10005446 [exp]	27.1	0.7907
AT5G04870		AK1, ATCPK1, CP...	calcium dependent protein kina...		Lus10028862 [exp]	28.5	0.7617
AT1G08110			lactoylglutathione lyase famil...		Lus10021429 [exp]	29.8	0.8025

Compare expression of checked genes

Lus10006226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.