Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26370 789 / 0 O-fucosyltransferase family protein (.1) AT2G01480 279 / 3e-88 O-fucosyltransferase family protein (.1) AT1G14970 274 / 2e-86 O-fucosyltransferase family protein (.1) AT1G38131 248 / 4e-76 O-fucosyltransferase family protein (.1) AT4G38390 246 / 5e-76 RHS17 root hair specific 17 (.1) AT1G35510 246 / 9e-76 O-fucosyltransferase family protein (.1) AT1G38065 242 / 4e-75 O-fucosyltransferase family protein (.1) AT4G16650 238 / 1e-72 O-fucosyltransferase family protein (.1) AT1G22460 233 / 7e-71 O-fucosyltransferase family protein (.1) AT2G37980 234 / 2e-70 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036875 [exp] 863 / 0 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 276 / 9e-87 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 273 / 4e-86 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 266 / 4e-83 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 257 / 3e-81 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10034606 [exp] 255 / 5e-79 AT2G01480 848 / 0.0 O-fucosyltransferase family protein (.1) Lus10001545 [exp] 253 / 5e-78 AT1G35510 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 250 / 6e-78 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10021790 [exp] 249 / 5e-77 AT2G01480 838 / 0.0 O-fucosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G185200 [exp] 812 / 0 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 808 / 0 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 283 / 6e-90 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 270 / 7e-85 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 263 / 1e-81 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 261 / 3e-81 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 249 / 4e-77 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 248 / 2e-76 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 244 / 1e-74 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 230 / 2e-69 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10006227 pacid=23139681 polypeptide=Lus10006227 locus=Lus10006227.g ID=Lus10006227.BGIv1.0 annot-version=v1.0 ATGATTTTGCTTGGCGTTGTTGCTTTCGCCGGGCTGATCTCGATTTTCTCCGTCTTCCATCGATTGAATGCTCCGTACTTGTGTAAAAAGGATGGCATTG TTCTCCACTGTCCACATGTGAAGGAGTCTTCTTCGCTGTGGGAGAATCCATTATCGGCAACAACTTCTTGGAAGCCTTGTGCTGAGCGTCGCGATGGTGG AAATTCAGATGTTCCTCGCGAGAATGAAACAAATGGTTATATCTTCATCCACGCAGAGGGTGGTTTGAACCAGCAAAGAATTGCTATATGCAATGCAGTT GCCGTAGCAAAAATATTGAATGCCACCCTGATTTTACCTGTTTTGAAGCAGGATCAGATTTGGAAAGACCAGACGAAATTTGAGGACATATTCGATGTTG AACATTTCATTGATTATTTAAAGGATGATCTGAGAATTGTTCGTGATATTCCTGAGTGGTTTACCGACAAAACTGAGTTGTTTACAAGCATTAGGCGAAC AGTGAAGAATATTCCTAAATATGCACCGGCACAGTTTTACATCGACAATGTCTTGCCACGAATCAAGGAGAAGAAAATTATGGCACTGAAGCCTTTTGTT GATCGGCTTGGGGCTCTGCATCTTAGATTTGAGAAAGGGATGGTTGGTTTATCCTTCTGCGATTTCGTGGGTACGAGAGATGAGAAAGCTAAGATGGCTG AGTACAGGAAGAAAGAATGGCCTAGGCGTTACAAGAATGGTTCCCATCTATGGCAACTAGCCCTCCAGAAAAGAAAGGAAGGACGGTGCCCCCTTGAACC CGGCGAGGTAGCAGTGATCCTCCGAGCAATGGGCTATCCCAAGGAAACTCAGATATACGTAGCTTCCGGGCAAGTCTACGGTGGGCAAAACCGAATGGCT CCTCTACGGAACATGTTCCCGAATCTGGTGACGAAAGAGGAGCTAGCAGCCAACGATGAGCTGACCAGTTTCAGGAAGCACGTAACGAGCTTAGCAGCGC TCGACTTCCTCGTGTGCCTTAAATCAGACGTCTTTGTCATGACCCATGGTGGCAACTTTGCCAAGCTGATTATCGGGGCGCGTCGATACATGGGTCATCG CCAGAAGTCGATAAAGCCAGACAAGGGGCTGATGTCCAAGTCCTTTGGGGATCCGTACATGGGTTGGGCAACTTTCGTAGAGGATGTGGTGGTAACCCAT CAAACAAGAACTGGATTGCCCGAGGAGACATTCCCCAACTATGATCTCTGGGAGAACCCTTTGACTCCTTGCATGTGTAAAGCTTGA
AA sequence Show only first row Show all	>Lus10006227 pacid=23139681 polypeptide=Lus10006227 locus=Lus10006227.g ID=Lus10006227.BGIv1.0 annot-version=v1.0 MILLGVVAFAGLISIFSVFHRLNAPYLCKKDGIVLHCPHVKESSSLWENPLSATTSWKPCAERRDGGNSDVPRENETNGYIFIHAEGGLNQQRIAICNAV AVAKILNATLILPVLKQDQIWKDQTKFEDIFDVEHFIDYLKDDLRIVRDIPEWFTDKTELFTSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFV DRLGALHLRFEKGMVGLSFCDFVGTRDEKAKMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGQVYGGQNRMA PLRNMFPNLVTKEELAANDELTSFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHRQKSIKPDKGLMSKSFGDPYMGWATFVEDVVVTH QTRTGLPEETFPNYDLWENPLTPCMCKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	0	1
AT2G40980			Protein kinase superfamily pro...		Lus10035407 [exp]	1.7	0.9277
AT3G58050			unknown protein		Lus10016244 [exp]	2.0	0.9249
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	2.2	0.9241
AT2G01970			Endomembrane protein 70 protei...		Lus10031876 [exp]	2.2	0.9503
AT3G60030	SBP	SPL12	squamosa promoter-binding prot...		Lus10004523 [exp]	3.9	0.8985
AT2G01970			Endomembrane protein 70 protei...		Lus10031308 [exp]	4.2	0.9339
AT5G19130			GPI transamidase component fam...		Lus10014561 [exp]	5.5	0.8772
AT5G54830			DOMON domain-containing protei...		Lus10034323 [exp]	5.7	0.9050
AT3G06060		TSC10A	TSC10A, NAD(P)-binding Rossman...		Lus10024146 [exp]	5.9	0.8699
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015808 [exp]	6.0	0.9043

Compare expression of checked genes

Lus10006227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.