Plant FIBer expression Database

Lus10006228 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G13030 192 / 6e-53 sphere organelles protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036876
[exp]
1008 / 0 AT1G13030 323 / 4e-102 sphere organelles protein-related (.1)
Lus10011406
[exp]
177 / 1e-46 AT3G26350 209 / 5e-60 unknown protein
Lus10006465
[exp]
129 / 2e-33 AT1G13030 91 / 3e-20 sphere organelles protein-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G048700
[exp]
254 / 2e-75 AT1G13030 194 / 1e-53 sphere organelles protein-related (.1)
Potri.008G185100
[exp]
242 / 5e-71 AT1G13030 199 / 1e-55 sphere organelles protein-related (.1)
PFAM info
Representative CDS sequence
>Lus10006228 pacid=23139724 polypeptide=Lus10006228 locus=Lus10006228.g ID=Lus10006228.BGIv1.0 annot-version=v1.0
ATGGAGACTGTGAGGCTCCGTATAGTGTTCGAACAAGCTCTAGCTGAATCCCTAAAGAAGAAGACAGGCGGGCTGAAACGTTTCTGGGTTCTCCTAAAAC
CTCAGCACAAAACCATCTCCGATCTTTCCAGTTACCTCCTTGACGTCTTCGACCTCCACAATGTCTGCCCTGAAGGCCTTCTCCTCTCTATGGAAGGGTA
CTATTTGCCGCCATTCGAGTCCATTTGCGTGTTGCAGGACAGGGATATTGTCCGGGTGAAGAGGAAGGCAACTTTGCGAATGTTGGAGTTAGTTGGTGCT
GATGGTGGTGGCGTTAAGTTTCTGGCGAATGAAGAGTTTGAGAAGGAAGCTGGAGGGTATGAGAGTGATGATCCGGAAGAGGAGGTTTCTAAGCTTGAGG
ATTCAATGCTCCATGTGGAGGAAACACCGGAAATTAAGAAGGTTTCTAAGAAGAGGAAGGCTTCTGAGGAACTTGGGAGCTCAAAGAAGAAGAAGAAGAA
GAAAGAGATAGCTTCTAGTGCTGAGAACTGTGCTGCTAAAGGTAGCAAGACTGGTGAAGAAGGCACCTCAAAAGCCAAGAAGTCGAGTGAACCTAATCAA
TGCAGTAATGATCATGTGGATGCATCAGGTTCACCTTCTGGAGATAAAAAGGTCCCGAGTAGAAGTGCTCGTCGTAAAAAGGCCAAAAGACAGTGGCTAA
AGGAGTTAAAAAGAGCTGAGAAGGAAAAAGAAGAGAAGCATTTATCTGCAACACCAAACGGGAAAGCTAGTCAAAAGAAGAATCACAAAGCCACTCCACA
CCTAGTGGAAAAAGAAGAGAAGCAATCGCTCGTAACAGCAAATGAGAAAGCTAGTCAAAAGAAGAAACCCAAAACCATCAAAGAATCCGTGGAAAAAAAT
ACACATACTTCGGTTGAAGAAGTTCTGGATAATGGTAACGATAAGCTTCAGGTGGACGATGATGAACAACCAGATCAAAATAACAACAAGGATGACGACG
AAATTGTGCCCATTGTAATAAGACCAGGACATATCCGCTTCGAGCCTCTTGAGAAAGTCTCTGTTCCAGGTAGTGCTGATCAGACAGTCAAGCACAATCA
AACTCTAGTGGATACTTCGCAATGGAATGGGATGAGCAAAAAGAAAGGCCAGAAATGGGGAAAACAGAACAGCGAGTCATGGAAATGGAATGAGAACGGA
AACTCCATCCATAAACCTTCTGAAACATGGAAGGAGAACTCGAATTCCTTCCGAAAACCTTCTGAAACATCCACCATTGATGAAGAAGACACTCCTGTTT
GCGATCATATTGACTTTGATAAGCTTCCTCCCTATGCAAGCTCACCCAGGGAAGCCGACATAATTGCCTATCGGCTCATTCAACTATCGTCATCCTGGAC
CCCGGAGCTCTCGGCATACTTGGTAGGGAAGATATCGGAATTCAACCCTCAGTCGAATAAGATCAAGCTGGTTGCAGTTCCAAAATACTCTTTGATCCCT
CAGAATAACGAAGAAGACGACGAAACACTGCCAGAAACATGTGTATTACAGGACGATGGCTCTCTCGAGATGGAATTTTCGTCACTTCTGGAAGTTCGCA
CTGTGAAATGTAGCGTCAGCACGAATCGGGCATTGTCAGCTACTGCTGCTGGAGTAGTGCTGACCTCTGCAAAAGCTCCGGATACGCCTACAAAAGCCCC
GATCGAACATCGCACTACTGATGCAGTAAACTCCTGGGATGAAATCAGCCAACCATTGAGTCCAAAGAAAGCTGAATTGTCACAGGGGCATAGCTGGAAT
AAACCCGAGAAGAATTTGGTCGGAAACCAAAGAACAGTGAAGCCCTGGAGAGGCAGTGCATTAGGTCCAACAATGGCTCTATTAAGAGCACAGAACGGAA
TCTGA
AA sequence
>Lus10006228 pacid=23139724 polypeptide=Lus10006228 locus=Lus10006228.g ID=Lus10006228.BGIv1.0 annot-version=v1.0
METVRLRIVFEQALAESLKKKTGGLKRFWVLLKPQHKTISDLSSYLLDVFDLHNVCPEGLLLSMEGYYLPPFESICVLQDRDIVRVKRKATLRMLELVGA
DGGGVKFLANEEFEKEAGGYESDDPEEEVSKLEDSMLHVEETPEIKKVSKKRKASEELGSSKKKKKKKEIASSAENCAAKGSKTGEEGTSKAKKSSEPNQ
CSNDHVDASGSPSGDKKVPSRSARRKKAKRQWLKELKRAEKEKEEKHLSATPNGKASQKKNHKATPHLVEKEEKQSLVTANEKASQKKKPKTIKESVEKN
THTSVEEVLDNGNDKLQVDDDEQPDQNNNKDDDEIVPIVIRPGHIRFEPLEKVSVPGSADQTVKHNQTLVDTSQWNGMSKKKGQKWGKQNSESWKWNENG
NSIHKPSETWKENSNSFRKPSETSTIDEEDTPVCDHIDFDKLPPYASSPREADIIAYRLIQLSSSWTPELSAYLVGKISEFNPQSNKIKLVAVPKYSLIP
QNNEEDDETLPETCVLQDDGSLEMEFSSLLEVRTVKCSVSTNRALSATAAGVVLTSAKAPDTPTKAPIEHRTTDAVNSWDEISQPLSPKKAELSQGHSWN
KPEKNLVGNQRTVKPWRGSALGPTMALLRAQNGI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G13030 sphere organelles protein-rela... Lus10006228
[exp]
0 1
AT1G13030 sphere organelles protein-rela... Lus10036876
[exp]
1.4 0.9377
AT5G36740 Acyl-CoA N-acyltransferase wit... Lus10022055
[exp]
2.2 0.8910
AT2G23530 Zinc-finger domain of monoamin... Lus10019647
[exp]
8.7 0.9001
AT5G66960 Prolyl oligopeptidase family p... Lus10017568
[exp]
11.0 0.8746
AT5G43130 TAF4, TAF4B TBP-associated factor 4B, TBP-... Lus10008297
[exp]
11.4 0.8402
AT5G52890 AT hook motif-containing prote... Lus10001140
[exp]
12.3 0.8942
AT5G25380 CYCA2;1 cyclin a2;1 (.1) Lus10013140
[exp]
15.4 0.9030
AT2G22840 GRF ATGRF1 growth-regulating factor 1 (.1... Lus10019274
[exp]
17.0 0.8764
AT3G20780 RHL3, HYP6, BIN... ROOT HAIRLESS 3, ELONGATED HYP... Lus10031812
[exp]
17.0 0.8725
AT3G22520 unknown protein Lus10000233
[exp]
19.0 0.8543

Lus10006228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.