Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55270 499 / 1e-166 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT3G06110 100 / 4e-24 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT3G23610 101 / 5e-24 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT5G23720 81 / 1e-15 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT2G04550 65 / 3e-11 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) AT3G01510 47 / 5e-05 LSF1 like SEX4 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036877 [exp] 1269 / 0 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10003291 [exp] 517 / 1e-172 AT3G55270 800 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10030324 [exp] 510 / 6e-170 AT3G55270 806 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10021940 [exp] 100 / 3e-24 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 89 / 1e-19 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 81 / 8e-18 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10032545 [exp] 87 / 4e-17 AT5G23720 1120 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10043195 [exp] 84 / 2e-16 AT5G23720 1047 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10002263 [exp] 70 / 1e-12 AT2G04550 327 / 1e-113 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G210900 [exp] 533 / 1e-178 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.008G049900 [exp] 528 / 9e-177 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.010G033000 [exp] 99 / 1e-23 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.012G105800 [exp] 86 / 5e-17 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.015G105000 [exp] 83 / 4e-16 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.014G160500 [exp] 65 / 3e-11 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Potri.006G040300 [exp] 62 / 6e-10 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.016G035700 [exp] 62 / 7e-10 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.001G349000 [exp] 43 / 0.001 AT3G01510 775 / 0.0 like SEX4 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10006229 pacid=23139705 polypeptide=Lus10006229 locus=Lus10006229.g ID=Lus10006229.BGIv1.0 annot-version=v1.0 ATGTTAGGCCAGGAGGAAAACAACCGGGCCGCCGCCGCATCCCCCGCCGCACGTAAGACTTATCTCCGATCAGTCTCCTGGAGCGACCATTCGCCGCGTA GACCTAACAACAACCCGCGACCTCATCCGTCCAATCACAGCAAGGCAAGGTCCAGTCTCCCGCCGTTGCAGCCTCTGTCGATAACCAGACCGCCGGCGGA GGAATGGCCTCGGGCCGGGTCGGACGATCTGGGCATCTGGCCGAACCCGCAAACTCCCAGAGGAGGTCCTCCTCTGACTCCACAGCCTCAAAGCTCCGTT AGAGAGTTCCAGTTCAAGAGGGAGAAGCTAGCATTCTTCGACAAAGAATGTTCAAGGATCGCCGACCATGTCTACTTAGGGAGCGATAAAGTCGCCAAGA ACCGAGAAATCTTGAGCCAGAATGGGATCACTCACGTCCTCAACTGTGTAGGCTTCGTATCCCCTGAGTATTTCAAAAACGACCTCGTTTACAAGACCCT TTGGTTGCAGGACAGTCCTTCTGAGGACATAACTAGCATTCTGTATGATGTGTTTGATTACTTTGAAGATGTCAGGGAGCAAGGTGGGAAGGTTCTCGTC CATTGTTGCCAAGGAGTTTCCAGGTCGACTTCTTTGGTGATTGCTTACCTAATGTGGAGGGAAGGCCAGAGCTTTGAGGATGCTTTCCAGTATGTTAAAG CAGCTAGAGGGGTTACGAATCCTAACATGGGGTTTGCCTGCCAGCTTCTTCAGTGTCAGAAGCGTGTTCATGCTGTTCCTGCTAGCCCGAACTCGGTGTT GAGGATGTACCGGATGGCGCCTCATTCTTCGTACGATGCGCTTCACCTCGTGCCGAAGATGGTGAGCCAGCCAGGTAATGGAGGGTTGGATTCTAGAGGG GCTTTCATTGTTCATGTTCCTAGTACTGTGTTTGTTTGGATAGGGAAGAATTGCTGTGATTCGATGTCGAGTCATGCTAGGGTTGCTGCGAATCAGGTGA TTCGTTACGAGAGGGCTCAGGGTCCTTTTGTTAGTGTTGTGGAAGGGGAAGAGAGTAACGATTTTTGGGATGCTCTTGGTTGGGATAAAGGGAATGGTTG TAGTAGTGAAAGGAAGGTTGATGAGTACGATTCGGATTTTGAGTTGTTTGATAAGGCGGTTCGTGGTGGAGTTGTTCCGTCTTGTTCGGTTTCAAATAGC GGGGTCGAGACTTGCTTGCCTGCTAGGGAGATTGGATGGGGGAAGCTTAGGCTGAAGTTCGCTAGTGGTGTAATGAAGGAGTTTCTCAGTGAAAACTTCA AGTTAGCTGATGAAGAATCTAGGCCGTTGGATTTGGTTGACTGTCCCGTACCGGATACGATCATGTATGAAGGTGAAGGAGGAGGAGAGCGAGAGCAAGA ACGAGCTTTTGCTCCTGGTTCACCTGACTCCTACGTGTCGTGCTCGCCAGACCAGGTGCAGAAATTTCGCTATAAGTCGCCTACGCTATTATCACCTTCA GCCTCTGATTACTCGTCGAGTTCGTTCACTTTTTCGCCTTCGTCCTCTAACTGGTCCGACTTGTCCTACTTGTCTTCCCAGCAGCCTTCACCGTCTGGTT TGGAACAACAACAGATCGATCCATTTGTTATAACGCAGAAAGGAACAACTCTGATCGCCTCACCGACGAAGGTCTTCCCTCTTAGTCCGACTTCCGGAGT CGAGAAGACTCATGTTTCTATCGCGGAGCGCAGAGGAAGTAATCCTCCTCCACTAATGGTGCTACCTGCGATCGATGAGCCTGCACATGCGAATCTAGCG AGTGCTTCTGAGACCTTTTCGCAGGATGACATGATGAACGACGCTCGGGAGCTTGAATGTATTAGAGAAGAACAAATGTCGGATGTTGAAGATGCGGCTG TGTCATCGACAACTCTGGTTCTGTACGATTTGCATACAATGAGCAAAGTTGATATCGGTCATTTGCAAGTCCTCGATTCTAGATCAGCTTACTTTATATT GGCTCGTGATGGAAGTTCTTTGCGCACTGCTGATGACCCTACTGTGCTGTATATGTGGTTGGGTCGACAATTTCCAGACGAAGATGAGCAGCCTGTGTTG AGAAGCCCTGGCTGTTTGCTTGATCGATTTGGCTTGCCTTCCAATGCTCCCATTCAGATTGTTAGGGAAGGTGAAGAACCACAGCAATTATCGAAGCTTC TCGGCGATTTCTTGTCTCGAAAATGA
AA sequence Show only first row Show all	>Lus10006229 pacid=23139705 polypeptide=Lus10006229 locus=Lus10006229.g ID=Lus10006229.BGIv1.0 annot-version=v1.0 MLGQEENNRAAAASPAARKTYLRSVSWSDHSPRRPNNNPRPHPSNHSKARSSLPPLQPLSITRPPAEEWPRAGSDDLGIWPNPQTPRGGPPLTPQPQSSV REFQFKREKLAFFDKECSRIADHVYLGSDKVAKNREILSQNGITHVLNCVGFVSPEYFKNDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGKVLV HCCQGVSRSTSLVIAYLMWREGQSFEDAFQYVKAARGVTNPNMGFACQLLQCQKRVHAVPASPNSVLRMYRMAPHSSYDALHLVPKMVSQPGNGGLDSRG AFIVHVPSTVFVWIGKNCCDSMSSHARVAANQVIRYERAQGPFVSVVEGEESNDFWDALGWDKGNGCSSERKVDEYDSDFELFDKAVRGGVVPSCSVSNS GVETCLPAREIGWGKLRLKFASGVMKEFLSENFKLADEESRPLDLVDCPVPDTIMYEGEGGGEREQERAFAPGSPDSYVSCSPDQVQKFRYKSPTLLSPS ASDYSSSSFTFSPSSSNWSDLSYLSSQQPSPSGLEQQQIDPFVITQKGTTLIASPTKVFPLSPTSGVEKTHVSIAERRGSNPPPLMVLPAIDEPAHANLA SASETFSQDDMMNDARELECIREEQMSDVEDAAVSSTTLVLYDLHTMSKVDIGHLQVLDSRSAYFILARDGSSLRTADDPTVLYMWLGRQFPDEDEQPVL RSPGCLLDRFGLPSNAPIQIVREGEEPQQLSKLLGDFLSRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10006229 [exp]	0	1
AT4G20380		LSD1	LESION SIMULATING DISEASE, LSD...		Lus10023392 [exp]	4.2	0.8870
AT1G14780			MAC/Perforin domain-containing...		Lus10041285 [exp]	4.5	0.8809
AT1G54610			Protein kinase superfamily pro...		Lus10001715 [exp]	4.9	0.9017
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014615 [exp]	7.1	0.8954
AT3G47550			RING/FYVE/PHD zinc finger supe...		Lus10034454 [exp]	8.8	0.8545
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10009367 [exp]	10.5	0.8609
AT5G17380			Thiamine pyrophosphate depende...		Lus10009141 [exp]	19.0	0.8438
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10007766 [exp]	19.8	0.8473
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	19.8	0.8673
AT1G77220			Protein of unknown function (D...		Lus10028621 [exp]	20.5	0.8341

Compare expression of checked genes

Lus10006229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.