Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24740 275 / 2e-92 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT3G53570 254 / 1e-82 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT4G32660 219 / 7e-70 AME3 Protein kinase superfamily protein (.1.2.3) AT3G17750 91 / 2e-20 Protein kinase superfamily protein (.1) AT1G73450 87 / 2e-19 Protein kinase superfamily protein (.1) AT1G73460 87 / 2e-19 Protein kinase superfamily protein (.1) AT5G35980 85 / 1e-18 YAK1 yeast YAK1-related gene 1 (.1.2) AT2G40120 81 / 2e-17 Protein kinase superfamily protein (.1) AT3G44850 79 / 1e-16 Protein kinase superfamily protein (.1) AT4G35500 76 / 9e-16 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036878 [exp] 337 / 2e-115 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10019458 [exp] 275 / 7e-91 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10043309 [exp] 274 / 9e-91 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10024431 [exp] 262 / 9e-86 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10025301 [exp] 256 / 2e-83 AT3G53570 726 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Lus10027636 [exp] 124 / 4e-35 AT4G24740 187 / 6e-59 FUS3-complementing gene 2 (.1.2) Lus10031328 [exp] 89 / 1e-21 AT1G73450 405 / 6e-135 Protein kinase superfamily protein (.1) Lus10031902 [exp] 91 / 2e-20 AT1G73450 1318 / 0.0 Protein kinase superfamily protein (.1) Lus10026360 [exp] 90 / 3e-20 AT1G73460 680 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G049100 [exp] 282 / 7e-94 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.015G085700 [exp] 275 / 3e-91 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.012G089700 [exp] 263 / 1e-86 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.016G079900 [exp] 263 / 1e-86 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G213400 [exp] 260 / 2e-85 AT3G53570 720 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.006G244400 [exp] 229 / 1e-73 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G039700 [exp] 90 / 2e-20 AT1G73460 1343 / 0.0 Protein kinase superfamily protein (.1) Potri.010G188400 [exp] 88 / 9e-20 AT2G40120 576 / 0.0 Protein kinase superfamily protein (.1) Potri.019G043400 [exp] 87 / 2e-19 AT5G35980 1088 / 0.0 yeast YAK1-related gene 1 (.1.2) Potri.015G033400 [exp] 87 / 3e-19 AT1G73460 1356 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006230 pacid=23139693 polypeptide=Lus10006230 locus=Lus10006230.g ID=Lus10006230.BGIv1.0 annot-version=v1.0 ATGGAGACTACGTCGCCGATTTCCCTCACAATCACATCGATGGTCGTCCCAGAAAGAGACCTACTGCTTGGGATTTCCCTCAAGCTTAGCCTAAGATTCC AGCACATTCATTTAGTGAGGCCACCTGTTTCAAGAGGCTGCCGAAGTGCCATCAAGGTCATCGATTTCGGCAGCACAGCTGATGGCCGTAAACATCACAA CTACATTGTTTCCACCAGACATTACCGTGCACCCAAAGTTATCCTGGGTCTTGGATGGAGTTACTCATGCGACCTATGGAGCGTCTGCTGTATCTTGGTC GAACTATGCACAGGAGGAGCATTGTTCCAGACGCATGATAACTTAGAGCATCTAGCCATGATGGAACGAGTTCTCGGCCCAATACCTCAACAGATGCTGA AAAGAGCCGATCGACAAGCGGAGAAGTACGTGAGAAGGGGTAGATTAGACTGGCCAGACAATGCAACCTCTCGTGATAGCATCAAGGCCGTCATGAAGCT GCCTCGTCTCCAGGGTCTATTCATACACTCACAGTCACATTTCACTCGCCGAGTCCTTTCAACGTTACTTATTTCCCTGTGGTTCGAGCAGAACCTGGTA ATGCAGCATGTTGATCACTCTGCCGGAGAAATCATCGATCTATTGCAAGGTCTCCTTCGCTACGATCCTTCCATCAGATTAACTGCTGACGAGGCCCTCC GGCATCCTTTCTTCTCCAGGGATCCTTACAGAAGAGTTTGA
AA sequence Show only first row Show all	>Lus10006230 pacid=23139693 polypeptide=Lus10006230 locus=Lus10006230.g ID=Lus10006230.BGIv1.0 annot-version=v1.0 METTSPISLTITSMVVPERDLLLGISLKLSLRFQHIHLVRPPVSRGCRSAIKVIDFGSTADGRKHHNYIVSTRHYRAPKVILGLGWSYSCDLWSVCCILV ELCTGGALFQTHDNLEHLAMMERVLGPIPQQMLKRADRQAEKYVRRGRLDWPDNATSRDSIKAVMKLPRLQGLFIHSQSHFTRRVLSTLLISLWFEQNLV MQHVDHSAGEIIDLLQGLLRYDPSIRLTADEALRHPFFSRDPYRRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10006230 [exp]	0	1
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	1.4	0.9562
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	2.0	0.9519
AT1G05620		NSH2, URH2	nucleoside hydrolase 2, uridin...		Lus10022062 [exp]	3.0	0.9485
AT1G70650			Ran BP2/NZF zinc finger-like s...		Lus10003580 [exp]	3.7	0.9297
AT5G24310		ABIL3	ABL interactor-like protein 3 ...		Lus10005919 [exp]	3.9	0.9396
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10025280 [exp]	5.7	0.9289
AT4G14290			alpha/beta-Hydrolases superfam...		Lus10041237 [exp]	6.6	0.9319
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10006828 [exp]	6.7	0.9339
					Lus10006087 [exp]	6.9	0.9389
AT4G10970			unknown protein		Lus10023075 [exp]	7.5	0.9415

Compare expression of checked genes

Lus10006230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.