Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24540 518 / 2e-180 CYP86C1 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) AT1G13140 492 / 5e-170 CYP86C3 "cytochrome P450, family 86, subfamily C, polypeptide 3", cytochrome P450, family 86, subfamily C, polypeptide 3 (.1.2) AT3G26125 491 / 2e-169 CYP86C2 "cytochrome P450, family 86, subfamily C, polypeptide 2", cytochrome P450, family 86, subfamily C, polypeptide 2 (.1) AT1G13150 476 / 8e-164 CYP86C4 "cytochrome P450, family 86, subfamily C, polypeptide 4", cytochrome P450, family 86, subfamily C, polypeptide 4 (.1) AT5G23190 438 / 2e-148 CYP86B1 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) AT5G08250 433 / 1e-147 Cytochrome P450 superfamily protein (.1) AT4G00360 370 / 2e-122 ATT1, CYP86A2 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1) AT1G01600 369 / 1e-121 CYP86A4 "cytochrome P450, family 86, subfamily A, polypeptide 4", cytochrome P450, family 86, subfamily A, polypeptide 4 (.1) AT1G63710 367 / 2e-121 CYP86A7 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) AT2G45970 360 / 2e-118 CYP86A8, LCR LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017394 [exp] 418 / 1e-140 AT5G23190 739 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10010193 [exp] 414 / 2e-139 AT5G23190 741 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040986 [exp] 413 / 7e-139 AT5G23190 751 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Lus10040687 [exp] 343 / 5e-112 AT5G58860 803 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10018217 [exp] 342 / 1e-111 AT5G58860 802 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Lus10032278 [exp] 342 / 6e-111 AT1G63710 792 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Lus10002527 [exp] 318 / 1e-102 AT2G23180 454 / 7e-156 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10003669 [exp] 315 / 5e-101 AT2G23180 440 / 4e-150 "cytochrome P450, family 96, subfamily A, polypeptide 1", cytochrome P450, family 96, subfamily A, polypeptide 1 (.1) Lus10014768 [exp] 327 / 4e-100 AT4G00360 756 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 2", ABERRANT INDUCTION OF TYPE THREE 1, cytochrome P450, family 86, subfamily A, polypeptide 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G050100 [exp] 589 / 0 AT1G24540 684 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.008G183300 [exp] 585 / 0 AT1G24540 682 / 0.0 "cytochrome P450, family 86, subfamily C, polypeptide 1", cytochrome P450, family 86, subfamily C, polypeptide 1 (.1) Potri.005G092200 [exp] 434 / 6e-147 AT5G23190 788 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.007G072100 [exp] 432 / 3e-146 AT5G23190 799 / 0.0 "cytochrome P450, family 86, subfamily B, polypeptide 1", cytochrome P450, family 86, subfamily B, polypeptide 1 (.1) Potri.014G085800 [exp] 363 / 2e-119 AT2G45970 866 / 0.0 LACERATA, "cytochrome P450, family 86, subfamily A, polypeptide 8", cytochrome P450, family 86, subfamily A, polypeptide 8 (.1) Potri.003G129100 [exp] 351 / 8e-115 AT1G63710 823 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 7", cytochrome P450, family 86, subfamily A, polypeptide 7 (.1) Potri.009G043700 [exp] 349 / 1e-114 AT5G58860 827 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.001G249700 [exp] 342 / 1e-111 AT5G58860 790 / 0.0 "cytochrome P450, family 86, subfamily A, polypeptide 1", cytochrome P450, family 86, subfamily A, polypeptide 1 (.1) Potri.015G132800 [exp] 329 / 7e-107 AT4G39490 589 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1) Potri.007G080300 [exp] 318 / 2e-102 AT4G39490 574 / 0.0 "cytochrome P450, family 96, subfamily A, polypeptide 10", cytochrome P450, family 96, subfamily A, polypeptide 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10006232 pacid=23139686 polypeptide=Lus10006232 locus=Lus10006232.g ID=Lus10006232.BGIv1.0 annot-version=v1.0 ATGGAGAACAACAACATTCAGTTCTTGCCCTTTTCCTTCTATGTTCTAACTCTAGCTTTGTTCTTCCTCTTCATTTTATGTGCCATCGTTGAGAGAATCT CGAAAAAAGGCCCGATGCTATGGCCGGTCCTAGGGATCCTTCCAACACTCTTGGCACACATTGACGATGTTTACGGCTTCATCACGAAAGCTCTTGTCGG TACCTTTCGCTCTAGAGGAATGTGGACGGGAGGCGCTCACGGAGTCGTCACTTGTCACCCTGTTAACATCGAGTACATGCTCAAAACCCACTTCGGGAAC TCCCCAAAGGGTAGATACTTTCGTGAAAGACGCCTTTATTTTCACGACCGGTTCAATGGTCACTTGTTCTTTCCTTGCGTGCAAAATGGTCAGTTTTCAA TGTCTCCCAAAATGGATTTGCTCGGAGATGGCATCTTCAATTCGGATTATCAACCGTGGAAGGAACAAAGGGGAGTAGCGAAAGGCGAGATGTATTTGAC CCGATTTATCAAATACTCGTTTCGAGTCATGGAGAATCTAGTCATTAAAAAACTGATCAAAGTCATGGAGAATTATACCATGATGAAGAATGAAAGCTTT GATCTTCAGGAAGTTCTCCTGCGTTTTACATTTGACAACATCTGCTCTGTAGCTTTCGGTGTCAAACCAGGCTGTTTATCCTTTGATTCCTCCAAACCAA TTCCCTTCGCAAGAGCCTTCGAGGAAGCAACTGAACTGACATTGACAAGATTCCTGACTCCTCCTTTCATATGGAAGCCCATGAAATGGCTCGGAATCGG GTACGAGAGGAAGCTGAAGGAAGCTTTCGGGTCTGTCCATGAATTTTCTGACGAAATAGTGAAGGAAAGGAAGGAGAAGCTCCGTAAAGAATCAAACTTG ACAAACCTGACCGATAAATCTGACGATCTCCTATTGAGACTTATCGTCAGGAATTGTCAGGAATTTTCTGACAAAGACCTGAGGGATTTCTGTGTCAGCT TCATCCTTGCAGGGAGGGACACAACCTCAATCGGGTTAGCATGGTTCTTCTGGCTCGTGGGTAACAACCAGCGAGTCGAAACCAGGATCCTCTATGAAAT CTGTCAGATTCTACGAATTCAGAACAGTACCAGAGACAAAGTAGTTGTGTTCACAGCTGAAGAACTCAAGAGCATGGTGTATTTACAAGCAGCATTGTCA GAGTCAATTAGGTTGTACCCGTCTGTCCTAACCGAGATGAAGGAAGTCACGAAGAACGATGTGCTACCCGATGGGTCGATCCTGAAGAGTGGAGCTCGAG TTGTGTACAGCATTTATTCAACGGCTAGGATGGATTCGGTGTGGGTAGAGGATTGCTTAGAGTTCAAACCGGAGAGGTGGAATGATAGAGACGGGAAGAA GGCTGTGAGTGTTGATCAGTTCAAGCATGCTGTGTTCAATGGAGGGCCAAGGCTGTGTTTGGGGAAGAAATTTGCTTACACACAGATGAAGATGGTGGCT GCTTCGATCTTGCTGAGGTTTCGAGTCGAGGTTGTCGATAGTCATTGTGTTGTTCCTAAAGTTACCACAACTCTTTACATGAAGGATGGGTTGCTGGTGA AACTTAAGCGTAGGGTAAACCTGATAGAGGTTTAA
AA sequence Show only first row Show all	>Lus10006232 pacid=23139686 polypeptide=Lus10006232 locus=Lus10006232.g ID=Lus10006232.BGIv1.0 annot-version=v1.0 MENNNIQFLPFSFYVLTLALFFLFILCAIVERISKKGPMLWPVLGILPTLLAHIDDVYGFITKALVGTFRSRGMWTGGAHGVVTCHPVNIEYMLKTHFGN SPKGRYFRERRLYFHDRFNGHLFFPCVQNGQFSMSPKMDLLGDGIFNSDYQPWKEQRGVAKGEMYLTRFIKYSFRVMENLVIKKLIKVMENYTMMKNESF DLQEVLLRFTFDNICSVAFGVKPGCLSFDSSKPIPFARAFEEATELTLTRFLTPPFIWKPMKWLGIGYERKLKEAFGSVHEFSDEIVKERKEKLRKESNL TNLTDKSDDLLLRLIVRNCQEFSDKDLRDFCVSFILAGRDTTSIGLAWFFWLVGNNQRVETRILYEICQILRIQNSTRDKVVVFTAEELKSMVYLQAALS ESIRLYPSVLTEMKEVTKNDVLPDGSILKSGARVVYSIYSTARMDSVWVEDCLEFKPERWNDRDGKKAVSVDQFKHAVFNGGPRLCLGKKFAYTQMKMVA ASILLRFRVEVVDSHCVVPKVTTTLYMKDGLLVKLKRRVNLIEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10006232 [exp]	0	1
AT3G46140			Protein kinase superfamily pro...		Lus10029018 [exp]	1.0	0.9569
AT1G49490			Leucine-rich repeat (LRR) fami...		Lus10027935 [exp]	5.1	0.9553
AT5G42120			Concanavalin A-like lectin pro...		Lus10029769 [exp]	6.7	0.8870
AT1G18190		GC2	golgin candidate 2 (.1)		Lus10009060 [exp]	7.5	0.9036
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10028262 [exp]	8.0	0.9001
					Lus10013654 [exp]	8.1	0.9471
AT5G03610			GDSL-like Lipase/Acylhydrolase...		Lus10028145 [exp]	8.3	0.9550
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	11.7	0.9484
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	12.4	0.9305
AT2G33530		SCPL46	serine carboxypeptidase-like 4...		Lus10040326 [exp]	13.2	0.9421

Compare expression of checked genes

Lus10006232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.