Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26120 412 / 4e-137 TEL1 terminal EAR1-like 1 (.1) AT1G67770 367 / 7e-121 TEL2 terminal EAR1-like 2 (.1) AT1G37140 126 / 7e-33 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT5G61960 131 / 8e-32 AML1 MEI2-like protein 1 (.1.2) AT5G07290 128 / 1e-30 AML4 MEI2-like 4 (.1) AT1G29400 125 / 9e-30 AML5 MEI2-like protein 5 (.1.2) AT4G18120 124 / 1e-29 AML3 MEI2-like 3 (.1.2) AT5G07930 112 / 1e-27 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT2G42890 111 / 3e-25 AML2, MEI2 MEI2-like 2 (.1.2.3) AT2G37340 47 / 2e-05 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036953 [exp] 875 / 0 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10002046 [exp] 571 / 0 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1) Lus10002047 [exp] 214 / 1e-65 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1) Lus10018194 [exp] 126 / 1e-31 AT1G37140 143 / 1e-40 MEI2 C-terminal RRM only like 1 (.1.2) Lus10011968 [exp] 127 / 1e-30 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2) Lus10004591 [exp] 127 / 1e-30 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10018195 [exp] 121 / 5e-30 AT1G37140 128 / 2e-35 MEI2 C-terminal RRM only like 1 (.1.2) Lus10020769 [exp] 124 / 2e-29 AT1G29400 786 / 0.0 MEI2-like protein 5 (.1.2) Lus10043204 [exp] 124 / 2e-29 AT5G61960 728 / 0.0 MEI2-like protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051100 [exp] 281 / 5e-86 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.008G183000 [exp] 278 / 1e-84 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.013G084400 [exp] 145 / 3e-38 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1) Potri.012G107100 [exp] 135 / 4e-33 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.002G088200 [exp] 129 / 1e-32 AT1G37140 159 / 3e-46 MEI2 C-terminal RRM only like 1 (.1.2) Potri.015G106000 [exp] 133 / 3e-32 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.005G202000 [exp] 128 / 7e-31 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.002G059800 [exp] 126 / 3e-30 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2) Potri.001G067300 [exp] 125 / 8e-30 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.003G162700 [exp] 123 / 5e-29 AT5G07290 645 / 0.0 MEI2-like 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF04059 [flax] [poplar] RRM_2 RNA recognition motif 2 CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10006234 pacid=23139721 polypeptide=Lus10006234 locus=Lus10006234.g ID=Lus10006234.BGIv1.0 annot-version=v1.0 ATGGTACAACGGTTGAAGTTAGCTGCAAAGGTCTCCCAAGCAATCGCTAACCTCACATGTTGTTGCTTTTCCTTTAGGTTGAAGAACAGAACCATCTATA TTAATCGTGGTGGAGCGGTGATCGGGTACCAACAGGATCCTTTTCTCACCCATAGTCATTACGACTGTACAACTCCCCGGGGGGGTTTTAATCACCGCGT CATCGGCGGAGGTGGAGAGCTACTGCCGCCGGCTGTTGCTCCAACGAGGGCGATTCTCATCTGCTCGCTTCCCGTCGACGGAAGAGTGAGCGAGACGCTC GTCCGACGAGAATTGGAAATGTTTGGACCCGTGAGGGCCGTCCAGATGGAGAGAATCCGCGACGGGATCGTCACCGTCCACTTCTACGACCTCCGCCACG CCGAGGCGGCGCTGGACGCCATCCGTGACCACCACCACGATCACATGCACAACAACAACTGCCGGCGCTGCCGCCCCTTCTCCGGCTGGTCCACAGTGTG GGCCCAGTTCACACTCCCGTCTATTCACGCCATGCCTGAAGGTCAAAACCAAGGGACGATCGTCGTCTTCAATCTCGACCCTAACGCCTCAGCTTCCTAC CTCCGACACATCTTCCAATCATACGGAACGGTGAAAGAGATTAGAGAAACGCCGATGAAGAGGCAGCAGAGGTTCATCGAATTCCACGACGTCAGAGACG CCGCTAAGGCGTTGAACGACATGAACGGAAAGGAGATTCTTGGGAAGCCAGTAGTTATCGAGTTCAGCCGACCTGGTGGGTTCAACAGGAAGTTGTCGTT CATCAATTCATCTTCCTCCTCCAAAATCACTACTCCCAAGTTCATCCCATTTTCTCCGCCGGCGAGGAGGTTGAACAACAGTGCTCCTCCATTAGCTCCC CCGTTAGCTCCCAGGCAGATTCTGAAGAGGAATTCGAGCATTGAGTCACCAAAGAAAGGGATAATGAAGTTCAGCCAAAGTAAGCCATGGAAAGGTGGGA AAGCTGGGAGAAACTCGAACAAATTATATGATAGCAGGTTCTTGATAAACGATGATGAACCAATCGAGGAATCATCATCATCGTCCAAGAATTGGAGTAG CAGTAGTACTGATTTGAGAACTACTGTAATGATCAAGAACATACCCAACAAGTACAGTCAGAAGCTGCTGTTGAACATGCTGGACAACCACTGCATTCAC TGCAATGAACAGCTCACCAATCATCAAGAAGAAGAAGATCATAATACCCAGAAGGAAAAGAAGCAGACTTTCTCATCATATGATTTCGTCTATCTCCCAA TTGATTTCAACAACAAGTGCAATGTGGGATATGGGTTCGTGAACATGACATCTCCAGAAGGTGCAAGGAGGCTGCACAAGGCTTTCAACAACCAGCATTG GGAGGTTTTCAACTCCAAGAAGATCTGTGAAGTCACCTATGCTAGAGTCCAGGGGTTGGAGGCATTGAAGGAGCACTTCAAGAACTCGAAGTTTCCAAGC GAGATGGATCATTATCTCCCGGTGGTTTTCTCCCCACCTAGAGATGGGAGCCAGTTGACTGACCCAGTCCCTATCCTTTGCTTAAAGCAGCAGCAGAGTG AGGAAGGAGAAAACGTAGGGGTGATGATGGCGAATGGCGTTCTTGAAGATGGTCTGAAGAAGTGCAGTTTGGTTGGAGAAGGGAACGGCGGCTGCGGCGG CGGAAGGAGGAGGGATGGGATTAGTGACAGTGACAGCAGCAGTAGCAGCAACAGTGGAATTGGGAGCAAGAGATAG
AA sequence Show only first row Show all	>Lus10006234 pacid=23139721 polypeptide=Lus10006234 locus=Lus10006234.g ID=Lus10006234.BGIv1.0 annot-version=v1.0 MVQRLKLAAKVSQAIANLTCCCFSFRLKNRTIYINRGGAVIGYQQDPFLTHSHYDCTTPRGGFNHRVIGGGGELLPPAVAPTRAILICSLPVDGRVSETL VRRELEMFGPVRAVQMERIRDGIVTVHFYDLRHAEAALDAIRDHHHDHMHNNNCRRCRPFSGWSTVWAQFTLPSIHAMPEGQNQGTIVVFNLDPNASASY LRHIFQSYGTVKEIRETPMKRQQRFIEFHDVRDAAKALNDMNGKEILGKPVVIEFSRPGGFNRKLSFINSSSSSKITTPKFIPFSPPARRLNNSAPPLAP PLAPRQILKRNSSIESPKKGIMKFSQSKPWKGGKAGRNSNKLYDSRFLINDDEPIEESSSSSKNWSSSSTDLRTTVMIKNIPNKYSQKLLLNMLDNHCIH CNEQLTNHQEEEDHNTQKEKKQTFSSYDFVYLPIDFNNKCNVGYGFVNMTSPEGARRLHKAFNNQHWEVFNSKKICEVTYARVQGLEALKEHFKNSKFPS EMDHYLPVVFSPPRDGSQLTDPVPILCLKQQQSEEGENVGVMMANGVLEDGLKKCSLVGEGNGGCGGGRRRDGISDSDSSSSSNSGIGSKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	0	1
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10011660 [exp]	1.0	0.9026
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	2.0	0.8390
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Lus10041803 [exp]	2.0	0.9025
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10023637 [exp]	3.5	0.8433
AT5G19090			Heavy metal transport/detoxifi...		Lus10031514 [exp]	4.2	0.8191
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10011487 [exp]	4.6	0.8324
AT3G61650		TUBG1	gamma-tubulin (.1)		Lus10010985 [exp]	5.5	0.8017
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037956 [exp]	5.9	0.8330
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	6.9	0.8308
AT5G62360			Plant invertase/pectin methyle...		Lus10032233 [exp]	6.9	0.8327

Compare expression of checked genes

Lus10006234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.