Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26115 118 / 2e-30 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036952 [exp] 234 / 1e-74 AT3G26115 452 / 7e-158 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051200 [exp] 139 / 6e-38 AT3G26115 392 / 1e-133 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006235 pacid=23139716 polypeptide=Lus10006235 locus=Lus10006235.g ID=Lus10006235.BGIv1.0 annot-version=v1.0 ATGTTGAAGAGCCATGCTGATGTGGTTGCTGGTAACAGTGCTCGTGTGCTCTGGTGTAGCGATATCTCTGAGGCTTTTTTCGAAAATGAGCAATCCTGGG AGGACGAATGTCCAAGAAAGGTTGTGATCATCAATGAAGGAGCTGGTGCTTGTTTAGCATTGCTTGCTTTAAAGTTGACATCTTTTGATTATGAGACCAC TAAGGAGCAGCAATGTCTTCCATTTTTCTGCAGGTCTAATCCGCTTGATCAACTACCTGTCTCAGGATCATCTATTAGGAAAATGCAGACCAGCAACTCT GATCGTAGGCTCCGGAACTGGCACAACAGCTACTGGTTTCGCACTCGGAGCCCTATGCTTGAGGTACATCTCACAATCGTCCCAGTTCCCATGGTGCTCC AAAACATGTTACTCAATAGACTTCCATGGAAGGTGACTGCAATCATGCTAGCCGATACAATCGACCAATACAAAGACAAGGAATACCGTCTTCTCTCCGA ATTCAGCACACGTTACGGAGTCCATCTCGACCACAACGATCTCGAGGGGCTCGTTCATTGGGTTCCGCGTCGGCGTCCAAGGAAGTATGTACACAAAACT CCTGTCACTCATTTATCACATTCATCAACGGTTTGTTTGCATTCTATTTTACAGATTTGGGAAGATATTGGAAGGGGGGTGGAGAAATGCCAGGCGATCG CGAGGGAAACCGGATTTCTCGTGGATCCTGTATACACTCTGGCAGCCTGGGAAGTGGCGGCTGAACTTAGTATTGAAGAAGAAGAGAGGATGGTGGTGAT GATTCATACAAGGGGGACTCTTGGTTCATTTGGTTTGGCACAGAGATACAAGTCTCAGTTTGCTAACCCGTAG
AA sequence Show only first row Show all	>Lus10006235 pacid=23139716 polypeptide=Lus10006235 locus=Lus10006235.g ID=Lus10006235.BGIv1.0 annot-version=v1.0 MLKSHADVVAGNSARVLWCSDISEAFFENEQSWEDECPRKVVIINEGAGACLALLALKLTSFDYETTKEQQCLPFFCRSNPLDQLPVSGSSIRKMQTSNS DRRLRNWHNSYWFRTRSPMLEVHLTIVPVPMVLQNMLLNRLPWKVTAIMLADTIDQYKDKEYRLLSEFSTRYGVHLDHNDLEGLVHWVPRRRPRKYVHKT PVTHLSHSSTVCLHSILQIWEDIGRGVEKCQAIARETGFLVDPVYTLAAWEVAAELSIEEEERMVVMIHTRGTLGSFGLAQRYKSQFANP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26115			Pyridoxal-5'-phosphate-depende...		Lus10006235 [exp]	0	1
AT3G50780			unknown protein		Lus10016789 [exp]	2.6	0.7730
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10019703 [exp]	15.7	0.7721
AT5G14210			Leucine-rich repeat protein ki...		Lus10032058 [exp]	19.2	0.7683
AT5G08630			DDT domain-containing protein ...		Lus10039626 [exp]	21.7	0.7405
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	33.9	0.7616
AT4G01190		ATPIPK10	phosphatidylinositol phosphate...		Lus10003028 [exp]	39.2	0.7371
AT5G14210			Leucine-rich repeat protein ki...		Lus10032059 [exp]	41.4	0.7307
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10004685 [exp]	42.8	0.6902
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Lus10023133 [exp]	43.9	0.7247
AT1G79915			Putative methyltransferase fam...		Lus10025778 [exp]	55.3	0.7170

Compare expression of checked genes

Lus10006235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.