Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13160 556 / 0 ARM repeat superfamily protein (.1) AT4G31520 441 / 3e-144 SDA1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036950 [exp] 906 / 0 AT1G13160 790 / 0.0 ARM repeat superfamily protein (.1) Lus10028318 [exp] 823 / 0 AT4G31520 697 / 0.0 SDA1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G182900 [exp] 769 / 0 AT4G31520 632 / 0.0 SDA1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05285 [flax] [poplar] SDA1 SDA1 PF08158 [flax] [poplar] NUC130_3NT NUC130/3NT domain
Representative CDS sequence Show only first row Show all	>Lus10006236 pacid=23139708 polypeptide=Lus10006236 locus=Lus10006236.g ID=Lus10006236.BGIv1.0 annot-version=v1.0 ATGGCGACCGGCAACCACCAAACCTCCGGATGCGCGATGTCGGAGTCGCTCTCCGCGTCCGGAAAGAGCTCGGAGAAGCTCAGCCTACCGTCGCTCCAAT CCAAGATGAAGATCGATCCGGAAGGATACACGACGGAGCTGGGCCTCATCTACAGCCAGTTCAACTGCGCCCTCGAGTTATTCCAGCAGCAGGCAGCTCT AAGTTTCGCCTCCGCCTCCGGTGTATGCGCCGACCCTACCATCGCCAAGGAGCTCGGCGACCGCACCATGTTCCTCTCTCACGTTGCGCCGTTTTACTCC AAGGAGCTCGCCAGGTTCCCCGGACAGCTCGTCGATTTTCTGAAATCGTCGGCCAGGTCTCTGCCGTTTGGACTCAGGGGCAACGTCACTCAAGCTCTTA TTCTCCTCGTCAATCGACAGATGGTTGATATAAAGGATGCTTTGGCGTTGTTTATGGAGCTTCAAATTGTTGGAGATAAGAACTTGAGGAATTTGGCTTT CTCTCATGTTGTCAATAGTATTAAGAGAATGAATAAGAAGCATAAGAATGAGGCCAAGAATCGTGCTCTTCAGAATATCCTGTTTACAATGTTGCAGCAA GAGGATGAATCTCTGGCGAAAAGAGCGCTCATTACGCTGTGTGAGCTTCATAGGAGAAAGGTTTGGTTTGATGATAGAACTGCTAATTCGATTTGCATGG CTTGTTTCCATTCTTCGTCAAGGATCATGATTGCTGCTTTGTCGTTCGTATTGGATTTTGAGAAGATACAAGATGATCACAACAGTGACAGTGAAGATAT GAGCAGCGACGATGATGCCAATCCGCTTCATGCTCAAGTTGCCATTAATAAAGAGGCTATTTATAAGGCAACCAAAACGGGTACTTCAGCTAGTAAGAAG AAAAAGAAAGCAAAATTGGAGCGTGCTGTCCGTAGCATGAAAAGGCAGCAGCGCTTGGCATCAGAGAAAACCAGTTCCAATTATTATTCACCTCTTAACC ATCTCAAGGATGCTCAGGGGTTTGCTGAGAAACTGTTCTCTCGTCTCAAGACTTGCAATGAACGTTTTGAGGTTAAAATGATGCTGATGAAAGTCATTGC TCGAACTATTGGGCTGCACCATTTGATCTTGTTGAACTTCTACCCTTTCCTGCAAAAGTATTGCCAGCCACATCAAAGAGATGTCACCAGTTTGCTTGCC GCAGCGGTTCAGGCTTGCCATGATATGGTCCCTCCTGATGCAGTTGAACCTTTATTTAAACAAATCGTTAATCAGTTTGTACATGATCATTCCCGTCCAG AGGCCATTGCTGTTGGACTTAATGTCATCAGGGAAATATGTCTGCGAATTCCTTTGTTGATGACCGAAGACTTGCTCCAGGATCTCGTGTTATACAAGAA ACAACACGAGAAAGCTGTTTCTGCCGCTGCTCGATCACTCATGGTCCTATTCAGAGAGATCTGCCCTTCACTGTTGGTTAAGAAGGATAGAGGTAGACCC ATAAACCCAAAGGCAAAGCCGAAAGCTTATGGAGAAGCTCCTCCTGTAGCCAGTGCTGTTCCTGGAATCGAATTACTAGACGAGTCTGCTGATACCGAGA GTGATGAAGACGCTGAAGATGATGGAGACGATTCTCAGTCGGATGCTGGTCCTGATGATACTGGTAATGACAAATTGTTTGGCAGCTATGATGAGGAAAA TGCTGTGCAGGATGACGAGGAAGATGAAAGTGATGATGATGATTTCCGAGCTGATTTGGATGACGATGGTGACGACAATGTGGATGAAATTGGCAGTGGG GAAGATGATGGAGAGGAGGAAGATGATGACGAGGATGAGGAAGAAGACGAAGAGTCTAGTGACCCAGAGGAGGCGGATGATGAGGTCAAAGTAAGCAAAT CGAATAAGAGAAAGCGGTTGGATTTCAACGGAGAGCTTATTGCAGCCGACACGAGCCTTCGAGCTTTGAAAAAACTGGCAGGGGAGAATCTGAAATCTCC TTCGTCAGATCCGGGAGATGGTTTCTATTCTCAAGAGGATTTCAAAAGGATTAGGGAACTGAAGGCGAAAAAGGAGGCTGGAATTGCCCTGATTCGACAT GGTTTCAAGCTTCCATCATCTGACCAATTATCTATGAAGCCTATGGATCCTTCAAAGCTTGAGGCTCACATCCGGCACAAAATGAGCAAGGAAGAAAGGC TAGAACTCGTGAAGGCCGGGAGGGAAGATAGAGGAAAGTACCAAGCTCGAAGTGCTATTAAAAAGAACAAGACTGGAGGTCTAAGCAATCAGCAGAAGAA CCACAAGAAGAAGATGCCACTGGCAGCAAAACGTTCAACAATCGTCAGAAACCGAGCAGATAAACGAAAGAAGAGCGATCGCTTGGGCAAGCAGTTCCGT GGAAAGAAAGCATGGAAGTAA
AA sequence Show only first row Show all	>Lus10006236 pacid=23139708 polypeptide=Lus10006236 locus=Lus10006236.g ID=Lus10006236.BGIv1.0 annot-version=v1.0 MATGNHQTSGCAMSESLSASGKSSEKLSLPSLQSKMKIDPEGYTTELGLIYSQFNCALELFQQQAALSFASASGVCADPTIAKELGDRTMFLSHVAPFYS KELARFPGQLVDFLKSSARSLPFGLRGNVTQALILLVNRQMVDIKDALALFMELQIVGDKNLRNLAFSHVVNSIKRMNKKHKNEAKNRALQNILFTMLQQ EDESLAKRALITLCELHRRKVWFDDRTANSICMACFHSSSRIMIAALSFVLDFEKIQDDHNSDSEDMSSDDDANPLHAQVAINKEAIYKATKTGTSASKK KKKAKLERAVRSMKRQQRLASEKTSSNYYSPLNHLKDAQGFAEKLFSRLKTCNERFEVKMMLMKVIARTIGLHHLILLNFYPFLQKYCQPHQRDVTSLLA AAVQACHDMVPPDAVEPLFKQIVNQFVHDHSRPEAIAVGLNVIREICLRIPLLMTEDLLQDLVLYKKQHEKAVSAAARSLMVLFREICPSLLVKKDRGRP INPKAKPKAYGEAPPVASAVPGIELLDESADTESDEDAEDDGDDSQSDAGPDDTGNDKLFGSYDEENAVQDDEEDESDDDDFRADLDDDGDDNVDEIGSG EDDGEEEDDDEDEEEDEESSDPEEADDEVKVSKSNKRKRLDFNGELIAADTSLRALKKLAGENLKSPSSDPGDGFYSQEDFKRIRELKAKKEAGIALIRH GFKLPSSDQLSMKPMDPSKLEAHIRHKMSKEERLELVKAGREDRGKYQARSAIKKNKTGGLSNQQKNHKKKMPLAAKRSTIVRNRADKRKKSDRLGKQFR GKKAWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13160			ARM repeat superfamily protein...		Lus10006236 [exp]	0	1
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10030190 [exp]	1.7	0.9280
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10001102 [exp]	7.3	0.8982
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	10.8	0.8968
AT5G66860			Ribosomal protein L25/Gln-tRNA...		Lus10019634 [exp]	18.2	0.8955
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10030113 [exp]	19.2	0.8988
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Lus10010845 [exp]	22.2	0.8800
AT1G09810		ECT11	evolutionarily conserved C-ter...		Lus10035790 [exp]	25.1	0.8942
AT5G50320		EAST1, AtELP3, ...	HISTONE ACETYLTRANSFERASE OF T...		Lus10014792 [exp]	26.2	0.8866
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10036607 [exp]	26.7	0.8879
AT5G61770		PPAN	PETER PAN-like protein (.1.2.3...		Lus10002672 [exp]	30.6	0.8638

Compare expression of checked genes

Lus10006236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.