Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13170 1197 / 0 ORP1D OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) AT4G08180 902 / 0 ORP1C OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) AT2G31020 843 / 0 ORP1A OSBP(oxysterol binding protein)-related protein 1A (.1) AT4G22540 763 / 0 ORP2A OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) AT4G12460 743 / 0 ORP2B OSBP(oxysterol binding protein)-related protein 2B (.1), OSBP(oxysterol binding protein)-related protein 2B (.2) AT2G31030 592 / 0 ORP1B OSBP(oxysterol binding protein)-related protein 1B (.1) AT1G77730 213 / 5e-63 Pleckstrin homology (PH) domain superfamily protein (.1) AT3G09300 177 / 7e-48 ORP3B OSBP(oxysterol binding protein)-related protein 3B (.1) AT5G02100 167 / 1e-44 UNE18, ORP3A UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) AT5G59420 163 / 5e-43 ORP3C OSBP(oxysterol binding protein)-related protein 3C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036949 [exp] 1560 / 0 AT1G13170 1241 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Lus10028087 [exp] 890 / 0 AT4G08180 1147 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10025635 [exp] 867 / 0 AT4G08180 1142 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024613 [exp] 766 / 0 AT4G22540 1065 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10035967 [exp] 682 / 0 AT4G08180 803 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10032251 [exp] 678 / 0 AT4G22540 979 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Lus10025695 [exp] 182 / 2e-47 AT4G08180 887 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Lus10024386 [exp] 167 / 1e-44 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1) Lus10010843 [exp] 165 / 9e-44 AT5G02100 771 / 0.0 UNFERTILIZED EMBRYO SAC 18, OSBP\(OXYSTEROL BINDING PROTEIN\)-RELATED PROTEIN 3A, Oxysterol-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051400 [exp] 1272 / 0 AT1G13170 1211 / 0.0 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.005G172900 [exp] 916 / 0 AT4G08180 1158 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.002G088000 [exp] 905 / 0 AT4G08180 1144 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.003G111600 [exp] 796 / 0 AT4G22540 1100 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.001G121700 [exp] 777 / 0 AT4G22540 1109 / 0.0 OSBP(oxysterol binding protein)-related protein 2A (.1), OSBP(oxysterol binding protein)-related protein 2A (.2), OSBP(oxysterol binding protein)-related protein 2A (.3), OSBP(oxysterol binding protein)-related protein 2A (.4) Potri.019G015111 [exp] 769 / 0 AT4G08180 889 / 0.0 OSBP(oxysterol binding protein)-related protein 1C (.1), OSBP(oxysterol binding protein)-related protein 1C (.2), OSBP(oxysterol binding protein)-related protein 1C (.3) Potri.008G182766 [exp] 508 / 2e-175 AT1G13170 471 / 2e-161 OSBP(oxysterol binding protein)-related protein 1D (.1), OSBP(oxysterol binding protein)-related protein 1D (.2) Potri.006G086400 [exp] 165 / 1e-43 AT3G09300 764 / 0.0 OSBP(oxysterol binding protein)-related protein 3B (.1) Potri.018G143600 [exp] 63 / 4e-10 AT4G25850 412 / 2e-143 OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) Potri.006G076400 [exp] 58 / 1e-08 AT5G57240 392 / 9e-136 OSBP(oxysterol binding protein)-related protein 4C (.1), OSBP(oxysterol binding protein)-related protein 4C (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01237 [flax] [poplar] Oxysterol_BP Oxysterol-binding protein CL0266 [flax] [poplar] PH PF00169 [flax] [poplar] PH PH domain
Representative CDS sequence Show only first row Show all	>Lus10006237 pacid=23139728 polypeptide=Lus10006237 locus=Lus10006237.g ID=Lus10006237.BGIv1.0 annot-version=v1.0 ATGAATCCGCTCTGCTGCATTGCTCCGGTCTCCATCGATCGGGATCGCGCCAACCCGGTCGTCGCCGCCAAATCAGTCGCAGCTCCCGATTCTGTCAGCC ACAGCTCGAAGCCGAGCTTCTCGTCTGCTCACCAGGTATATTCCGGAGCTGATTTCGACAGGCTGTCGAACTCTGCTGCGGTGGATCCCGAGGAACCGTC TATCGGAGGAGATTCGACGAAAGCGAGCAATGCGGCGGTGGTGGCCGGGATTCTGTACAAGTGGGTCAACTACGGGAAAGGATGGAGGTCGAGGTGGTTT GTTCTGGAAGATGGCGTGCTGTCGTACTACAAAATTCACGGTCCTGACAAGATTCTGATGAGTCCTGGTAAGGAGAAAGGTGTTAGGGTGATCGGAGGTG AGTCGATGAGGTTCGTCAGAAAGGAGAACTGGAGTAGTGGCGGGAGTGGAAGTCGGATTGCTGGCTCCAAGCAGTGGAAGCCTTTTGGTGAGATTCATTT AAAGGTATCTTCAATTCGAGCTAGCAAGTCAGATGACAAGAGGCTGACAATCTTCACAGGAACGAAGACGCTTCACTTACGTTGCATCACTAGAGACGAC AGAGCTTTATGGCTCGAGGCATTGCAGACAGCAAAGGATCGTTTTCCACGAGTGTTTGCTAGCACTGATTTCACCTCGGCTGACGATGTGGTTGTGTCAA CCGAGAAGTTGAGGTCTCGGTTAGTGCAAGAAGGCGTCGGTGAGGTGGTGGTTAAAGATTGTGAGACTATTATGCTCTCGGAAGTGTCTGAGCTGCAAAA CCAGTTGAGGTGCCTTCAGCGGAAGCATCTTATCTTGTTGGATACCTTAAGGCAGTTAGAGACGGAGAAAATAGAGTTGGAAACTACTGTAGTGGATGAG ACGAAGGAGCGGGACTCGTATTGTGGACAAGCAAACAGAAGATTTAGTGGTCAGTATAATCTTCTTGATCCAGATCTTTTCCATGTTATCACAGCAGTTC ATTTCTATTCTGTGTTGTCAGAAGGCAGTGTTAGCGACTCTGATGCAGACAACGAAAGTCAAGATGGGGTTGATGCTGAAACTGATGAAGAAGACATGAT GTTCTTGGACACGAACGATTTTTTGTCAGCTGAAGCATTGCGGAGCGCTTCGTACAGGAGTAGGGAATCAGTTGGAAGTGCGTGTATATACGACAAAGAC GCGTTTTACTCCGATCGCCTGCAGCATGAGAAAGACATCACGACAGCCAACTATCCATTAGTTAGAAGGCGCGACAATTTGCCGGAACCAAAGGAGAAGG AGAAGCCTGTTGGTCTGTGGTCGATTATCAAGGACAATATCGGGAAGGACTTGTCTGGAGTCTGCCTTCCCGTGTACTTTAACGAACCACTCTCCTCGCT ACAGAAGTGCTTCGAGGATTTGGAGTACTCGTACCTGGTCGATCGAGCATTACAATGGGGGAAACAGGGGAACGACCTGATGCGAATTCTGCATATTGCG GCATTCGCTGTATCTGGGTATGCATCGACCGAAGGCCGCCAGTGTAAGCCGTTCAACCCTCTACTGGGGGAGACGTACGAAGCTGATTATCCAGACAAAG GTCTACGTTTCTTTTCTGAAAAGGTTAGCCACCACCCTATGATTGTCGCGTGTCACTGTGAGGGGAAAGGCTGGACATTCTGGGGAGACTCGAATCTCAA GGGCAAGTTCTGGGGAAGATCTATCCAACTCGATCCCGTAGGCATAGTTACGTTGCAGTTTGAGGATGGCGAGACTTACCAATGGAGCAAAGTGACGACG TCGATATACAACATCATTCTAGGCAAACTGTACTGTGATCACTACGGCATTATGCGGATCAAAAGCAGCGGCAACTACTCGTGCAGGCTCAAGTTCAAGG AGCAGTCCATCATCGACCGAAACCCCCATCAGGTTCACGGGTTCGTACAGGACGACAGAACTGGACAGAAGGTGGCAATGCTGGTGGGGAAGTGGGACGA AGCGATGTACTATGTTCTAGGCGATCCAACGACGAAGCCAAAGGGTTACGACCCGATGACAGAAGCGATCTTATTATGGGAGAGGGACAAGTCGGTTACT AAAACCAGATACAACCTCACACCCTTCGCCATAACCTTAAACGAGGTCACTCCCGGATTGTTGGAGAAGTTGCCACCCACAGACTCCAGACTTCGACCGG ATCAGAGGTTCCTCGAAAACGGGGAATATGAGTTGGCGAATGCGGAGAAGTTGAGACTCGAACAGCTACAAAGACAGGCCAGGAAGGTGCAAGAAAGGGG ATGGCAGCCGCGTTGGTTCCGACGCGACCACAATTGTTGCTACAAGTACACGGGAGGCTACTGGGAAGCTAGGGGAAGGAAGGGCTGGGATGGGATTCCG GGCATATTCGGGCAAACCATGGCTGGAGCAACCGATTCACCATCTTCTTCGGCTGAGGAAGAGTTAGTATAG
AA sequence Show only first row Show all	>Lus10006237 pacid=23139728 polypeptide=Lus10006237 locus=Lus10006237.g ID=Lus10006237.BGIv1.0 annot-version=v1.0 MNPLCCIAPVSIDRDRANPVVAAKSVAAPDSVSHSSKPSFSSAHQVYSGADFDRLSNSAAVDPEEPSIGGDSTKASNAAVVAGILYKWVNYGKGWRSRWF VLEDGVLSYYKIHGPDKILMSPGKEKGVRVIGGESMRFVRKENWSSGGSGSRIAGSKQWKPFGEIHLKVSSIRASKSDDKRLTIFTGTKTLHLRCITRDD RALWLEALQTAKDRFPRVFASTDFTSADDVVVSTEKLRSRLVQEGVGEVVVKDCETIMLSEVSELQNQLRCLQRKHLILLDTLRQLETEKIELETTVVDE TKERDSYCGQANRRFSGQYNLLDPDLFHVITAVHFYSVLSEGSVSDSDADNESQDGVDAETDEEDMMFLDTNDFLSAEALRSASYRSRESVGSACIYDKD AFYSDRLQHEKDITTANYPLVRRRDNLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDRALQWGKQGNDLMRILHIA AFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCEGKGWTFWGDSNLKGKFWGRSIQLDPVGIVTLQFEDGETYQWSKVTT SIYNIILGKLYCDHYGIMRIKSSGNYSCRLKFKEQSIIDRNPHQVHGFVQDDRTGQKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAILLWERDKSVT KTRYNLTPFAITLNEVTPGLLEKLPPTDSRLRPDQRFLENGEYELANAEKLRLEQLQRQARKVQERGWQPRWFRRDHNCCYKYTGGYWEARGRKGWDGIP GIFGQTMAGATDSPSSSAEEELV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13170		ORP1D	OSBP(oxysterol binding protein...		Lus10006237 [exp]	0	1
AT2G28070		ABCG3	ATP-binding cassette G3, ABC-2...		Lus10037384 [exp]	1.4	0.8468
AT3G07210			unknown protein		Lus10038194 [exp]	4.2	0.8424
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10009184 [exp]	8.0	0.8266
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10033860 [exp]	10.1	0.8324
AT1G28240			Protein of unknown function (D...		Lus10001446 [exp]	10.4	0.7897
AT3G46200		ATNUDT9	nudix hydrolase homolog 9 (.1)		Lus10005433 [exp]	12.0	0.8206
AT2G40980			Protein kinase superfamily pro...		Lus10015685 [exp]	12.3	0.8072
AT1G75060			unknown protein		Lus10018805 [exp]	13.9	0.7801
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10010472 [exp]	14.7	0.8070
AT3G56370			Leucine-rich repeat protein ki...		Lus10012877 [exp]	15.7	0.8076

Compare expression of checked genes

Lus10006237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.