Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13180 786 / 0 ATARP3, DIS1 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) AT2G42100 226 / 1e-69 Actin-like ATPase superfamily protein (.1) AT3G53750 225 / 3e-69 ACT3 actin 3 (.1) AT2G37620 225 / 3e-69 AAC1, ACT1 ARABIDOPSIS ACTIN 1, actin 1 (.1.2) AT5G59370 224 / 5e-69 ACT4 actin 4 (.1.2) AT3G12110 224 / 7e-69 ACT11 actin-11 (.1) AT3G46520 224 / 8e-69 ACT12 actin-12 (.1) AT5G09810 223 / 1e-68 ACT2/7, ACT7 actin 7 (.1) AT1G49240 217 / 2e-66 FIZ1, ACT8 FRIZZY AND KINKED SHOOTS, actin 8 (.1) AT3G18780 217 / 2e-66 FIZ2, LSR2, ENL2, DER1, ACT2 LIGHT STRESS-REGULATED 2, FRIZZY AND KINKED SHOOTS 2, ENHANCER OF LRX1 2, DEFORMED ROOT HAIRS 1, actin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036948 [exp] 769 / 0 AT1G13180 700 / 0.0 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) Lus10016259 [exp] 224 / 9e-69 AT3G46520 767 / 0.0 actin-12 (.1) Lus10016558 [exp] 223 / 1e-68 AT3G12110 768 / 0.0 actin-11 (.1) Lus10040826 [exp] 223 / 1e-68 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005457 [exp] 223 / 1e-68 AT3G12110 768 / 0.0 actin-11 (.1) Lus10005163 [exp] 223 / 1e-68 AT3G12110 766 / 0.0 actin-11 (.1) Lus10001694 [exp] 223 / 1e-68 AT3G12110 766 / 0.0 actin-11 (.1) Lus10006783 [exp] 223 / 1e-68 AT5G09810 778 / 0.0 actin 7 (.1) Lus10005820 [exp] 223 / 1e-68 AT5G09810 778 / 0.0 actin 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051500 [exp] 812 / 0 AT1G13180 811 / 0.0 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) Potri.008G182700 [exp] 806 / 0 AT1G13180 771 / 0.0 DISTORTED TRICHOMES 1, ARABIDOPSIS THALIANA ACTIN-RELATED PROTEIN 3, ACTIN-RELATED PROTEIN 3, Actin-like ATPase superfamily protein (.1) Potri.001G309500 [exp] 223 / 1e-68 AT5G09810 775 / 0.0 actin 7 (.1) Potri.010G204300 [exp] 223 / 1e-68 AT3G12110 733 / 0.0 actin-11 (.1) Potri.019G010400 [exp] 223 / 1e-68 AT5G09810 774 / 0.0 actin 7 (.1) Potri.008G055500 [exp] 223 / 1e-68 AT3G12110 765 / 0.0 actin-11 (.1) Potri.016G045500 [exp] 223 / 1e-68 AT3G12110 767 / 0.0 actin-11 (.1) Potri.006G192700 [exp] 223 / 1e-68 AT3G12110 767 / 0.0 actin-11 (.1) Potri.011G148000 [exp] 221 / 4e-68 AT5G09810 731 / 0.0 actin 7 (.1) Potri.001G453600 [exp] 221 / 8e-68 AT5G09810 769 / 0.0 actin 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00022 [flax] [poplar] Actin Actin
Representative CDS sequence Show only first row Show all	>Lus10006238 pacid=23139714 polypeptide=Lus10006238 locus=Lus10006238.g ID=Lus10006238.BGIv1.0 annot-version=v1.0 ATGGACCCCACCGCTCGTCCCGCCGTGGTCATCGACAACGGCACTGGGTACACTAAGATGGGATTCGCGGGAAACGTGGAGCCGTGTTTTACCTTGCCAA CAGTGGCTGCGGTGAACGAATCGTTTCTCAATCAATCTCGGGCTTCCTCGAAGGCGAATTGGCTGGCTCAGCATAGCGCAGGGGTTTTGGCCGATCTGGA CTTCTTCATTGGGGATGAAGCCATTACCAAATCGAGATCTAGCAGTACTTACAACCTCAGCTACCCGATTCAACATGGCCAAGTTGAGAATTGGGACGCC ATGGAGAGGTACTGGCAGCAGTCTATATTCAATTACTTGCGATGTGATCCAGAGGATCATTACTTTCTTTTGACCGAGAGCCCGCTCACGGCACCGGAGA GTAGGGAGTATACTGGTGAGATCATGTTTGAGACCTTCAATGTCCCTGGCCTTTACATTGCTGTCAATTCGGTTCTTGCTCTTGCTGCCGGCTATACTGC ATCCAAGTGCGAGATGACAGGTGTAGTGGTGGATGTTGGAGATGGAGCAAGTCGTGTGGTCCCTGTTGCAGAGGGTTATGTTATTGGAAGTAGCATAAAA ACCATTCCAATTGCAGGGAAGGACGTTACACTTTTTGTGCAGCAGCTCATGCGGGAAAGAGGAGAGAATGTACCACCTGAAGATTCGTTCGAAGTGGCTC GGAAAGTGAAAGAAATGTATTGCTACACCTGTTCTGACATTGTCAAGGAGTTTAACAAGCATGATAAAGAACCATCGAAATATATAAAGCAGTGGAGAGG TATTAAGCCGAAAACCGGAGCACCGTACTCATGTGATATTGGCTACGAGCGATTCCTTGGACCAGAGATTTTCTTCAATCCTGAGACTTATAGCACTGAC TTCACAACTCCTTTACCAGAAGTAATAGACAAATGTATACAGTCGGCTCCAATCGACACAAGGAGGGCTTTATACAAGAATATAGTATTATCTGGAGGGT CAACCATGTTCAAAGACTTTGGTAGAAGGTTGCAACGAGATATAAAGAAGATTGTGGATGCACGAGTCCGAGCATCTGAAGCCATACTTGGTGGTGATAT TAAAGTGAGCGTTTCTGAATTCTTAACGCTTTTCTTCGGCGTTCTTCTAAATAAACTCAAAAAAGGCTCGTTTAACCCATTGTTATGTGGTCTCCAGGCT CAACCAGTGGAAGTAAATGTTGTCAGCCATCCTATCCAGAGATATGCAGTGTGGTTTGGAGGTTCAGTACTTGCATCAACACCTGAGTTTTTCGCGGCTT GCCACACGAAAGCCGAATACGAAGAGCACGGAGCAAGCATATGCCGCACGAATCCTGTTTTCAAGGGAATGTATTAG
AA sequence Show only first row Show all	>Lus10006238 pacid=23139714 polypeptide=Lus10006238 locus=Lus10006238.g ID=Lus10006238.BGIv1.0 annot-version=v1.0 MDPTARPAVVIDNGTGYTKMGFAGNVEPCFTLPTVAAVNESFLNQSRASSKANWLAQHSAGVLADLDFFIGDEAITKSRSSSTYNLSYPIQHGQVENWDA MERYWQQSIFNYLRCDPEDHYFLLTESPLTAPESREYTGEIMFETFNVPGLYIAVNSVLALAAGYTASKCEMTGVVVDVGDGASRVVPVAEGYVIGSSIK TIPIAGKDVTLFVQQLMRERGENVPPEDSFEVARKVKEMYCYTCSDIVKEFNKHDKEPSKYIKQWRGIKPKTGAPYSCDIGYERFLGPEIFFNPETYSTD FTTPLPEVIDKCIQSAPIDTRRALYKNIVLSGGSTMFKDFGRRLQRDIKKIVDARVRASEAILGGDIKVSVSEFLTLFFGVLLNKLKKGSFNPLLCGLQA QPVEVNVVSHPIQRYAVWFGGSVLASTPEFFAACHTKAEYEEHGASICRTNPVFKGMY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13180		ATARP3, DIS1	DISTORTED TRICHOMES 1, ARABIDO...		Lus10006238 [exp]	0	1
AT2G01070			Lung seven transmembrane recep...		Lus10036166 [exp]	1.0	0.9377
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Lus10017079 [exp]	3.5	0.8994
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10037795 [exp]	4.2	0.9172
AT2G01070			Lung seven transmembrane recep...		Lus10005732 [exp]	4.7	0.9180
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024182 [exp]	5.9	0.8944
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10000243 [exp]	8.0	0.8493
AT3G10700		GalAK	galacturonic acid kinase (.1)		Lus10014251 [exp]	8.4	0.8869
AT3G10700		GalAK	galacturonic acid kinase (.1)		Lus10025946 [exp]	8.4	0.9061
AT4G21450			PapD-like superfamily protein ...		Lus10039757 [exp]	8.9	0.8700
AT3G08550		ABI8, ELD1, KOB...	KOBITO, ABA INSENSITIVE 8, elo...		Lus10024181 [exp]	11.0	0.8846

Compare expression of checked genes

Lus10006238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.