Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006239 pacid=23139701 polypeptide=Lus10006239 locus=Lus10006239.g ID=Lus10006239.BGIv1.0 annot-version=v1.0 ATGGCACTCAACAAGGTCGTTATCCTCGCTCTCTTCTTCGCCGCCGTGATCAGCGTCGCCACCGCTGCTGAGCCGGCAGCCGACGCCGCCGCTGGCGAGA AGAATGCCACCGCGAATGCAACCGACGCCGCTGCTTCCCCAGATGCCATCGGAACTACTGATGGGGACGCGTCCGCACCCACCGCTAACGGAGATGTAGC TCCCGGACCCGTAGGAAGTGGCGCCGGGGCCGGAGCTCCTGCCGCCGAGGCTCCCAAGAGCGATGCCAACACTGTCTCTGTCTCCGCCGCCGCTGGCATT GCCGCCGTTGCTGGATACTTTGTTATGTAA
AA sequence Show only first row Show all	>Lus10006239 pacid=23139701 polypeptide=Lus10006239 locus=Lus10006239.g ID=Lus10006239.BGIv1.0 annot-version=v1.0 MALNKVVILALFFAAVISVATAAEPAADAAAGEKNATANATDAAASPDAIGTTDGDASAPTANGDVAPGPVGSGAGAGAPAAEAPKSDANTVSVSAAAGI AAVAGYFVM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006239 [exp]	0	1
AT5G27510			Protein kinase superfamily pro...		Lus10034285 [exp]	5.7	0.6599
AT1G02335		GL22	germin-like protein subfamily ...		Lus10004857 [exp]	37.5	0.5921
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10034646 [exp]	54.1	0.5250
AT5G20690			Leucine-rich repeat protein ki...		Lus10005175 [exp]	54.3	0.5330
AT3G53170			Tetratricopeptide repeat (TPR)...		Lus10024144 [exp]	59.4	0.5208
AT1G19880			Regulator of chromosome conden...		Lus10010614 [exp]	80.4	0.4916
AT2G29060	GRAS		GRAS family transcription fact...		Lus10037752 [exp]	88.2	0.5180
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	95.5	0.5234
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10003704 [exp]	200.8	0.4872
AT1G60630			Leucine-rich repeat protein ki...		Lus10019429 [exp]	205.8	0.4870

Compare expression of checked genes

Lus10006239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.