Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24510 816 / 0 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 219 / 7e-66 TCP-1/cpn60 chaperonin family protein (.1) AT5G26360 191 / 7e-55 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 189 / 2e-54 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 166 / 1e-45 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G11830 164 / 5e-45 TCP-1/cpn60 chaperonin family protein (.1.2) AT5G16070 152 / 7e-41 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 149 / 1e-39 TCP-1/cpn60 chaperonin family protein (.1) AT3G03960 129 / 1e-32 TCP-1/cpn60 chaperonin family protein (.1) AT3G14270 60 / 2e-09 FAB1B FORMS APLOID AND BINUCLEATE CELLS 1B, phosphatidylinositol-4-phosphate 5-kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036947 [exp] 872 / 0 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 858 / 0 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006457 [exp] 857 / 0 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10000113 [exp] 580 / 0 AT1G24510 648 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10008670 [exp] 219 / 8e-66 AT3G18190 967 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10026151 [exp] 199 / 2e-59 AT3G18190 740 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10012380 [exp] 199 / 4e-58 AT5G20890 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10032176 [exp] 199 / 5e-58 AT5G20890 949 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10014511 [exp] 198 / 5e-58 AT5G20890 916 / 0.0 TCP-1/cpn60 chaperonin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G051700 [exp] 830 / 0 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 826 / 0 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.012G051300 [exp] 226 / 3e-68 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 222 / 8e-67 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.T046300 [exp] 195 / 2e-56 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 194 / 6e-56 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.001G341100 [exp] 191 / 4e-55 AT5G20890 944 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 191 / 4e-55 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.006G128600 [exp] 187 / 6e-54 AT5G20890 904 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 179 / 2e-50 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10006240 pacid=23139711 polypeptide=Lus10006240 locus=Lus10006240.g ID=Lus10006240.BGIv1.0 annot-version=v1.0 ATGGCTGGGAGCCTTCTAGAGCAGGCTGAGAAGTTGATAGAGCGGGGAATTCATCCAATTAGAATTGCAGAGGGCTACGAGATGGCATCTAGAATAGCGG TTGAACATATGGAGCGTATTGCTCACAAGTTTGAATTTGAAGAGAAGAACATTGAACCCCTGGTTCAAACATGCATGACTACCTTATCTTCGAAGATTGT GAATCGATGCAAGCGTAGTCTGGCTGAAATTGCAGTCAAAGCTGTTCTCGCTGTTGCAGATCTAGAGAGGAAGGATGTTAATTTGGACTTGATTAAGGTT GATGGCAAGGTGGGTGGTAAGTTGGAAGATACCGAACTGATATACGGAATAGTCGTCGACAAGGACATGAGTCACCCACAGATGCCTAAGCAAATTCAAG ACGCAAACATAGCTATCCTGACATGCCCCTTTGAACCTCCGAAGCCAAAGACCAAGCATAAGGTGGACATTGACACAGTAGAGAAGTTTGAGACTCTTCG TAGGCAGGAGCAGCAGTATTTTGATGATATGGTTCAGAAATGCAAGGATGTTGGTGCCACCCTGGTTATCTGCCAGTGGGGATTCGACGACGAGGCAAAC CATTTGTTAATGCACAGAAACCTGCCTGCAGTGCGTTGGGTCGGTGGAGTAGAGCTAGAGCTGATAGCTATCGCCACAGGTGGCAGAATTGTTCCAAGGT TCCAAGAACTGACACCAGAGAAGCTAGGAAAGGCTGGTTTGGTCAAGGAAAAGGCCTTTGGTACCACAAAAGACCGAATGCTCTACATTGAACATTGTGC CAATTCAAGAGCTGTCACCATATTTATCCGTGGAGGTAACAAGATGATGGTCGAAGAGACGAAGCGAAGCATCCATGACGCTTTATGTGTCGCTAGGAAT CTCATCCGCAACAACTCTATTGTATATGGTGGTGGCTCCGCTGAGATATCGTGCTCAATCGCTGTTGAAGCTGCTGCTGATAGATACCCGGGAGTCGAGC AGTATGCCATCCGGGCTTTTGCTGATGCCTTGGATGCAGTTCCTATGGCACTCGCGGAAAACAGCGGACTCCAGCCTATCGAGACACTGTCCGCTGTGAA GTCTCAGCAAATCAAGGAGAACAACCCTCATTGCGGAATCGACTGCAACGATGTTGGTACAACTGACATGCGCGAGCAGGATGTGTTCGAGACGCTGATC GGCAAGCAACAGCAGATCTTGCTCGCTACCCAAGTCGTCAAGATGATACTGAAAATAGACGACGTCATCTCTCCCTCCGAGTTCTGA
AA sequence Show only first row Show all	>Lus10006240 pacid=23139711 polypeptide=Lus10006240 locus=Lus10006240.g ID=Lus10006240.BGIv1.0 annot-version=v1.0 MAGSLLEQAEKLIERGIHPIRIAEGYEMASRIAVEHMERIAHKFEFEEKNIEPLVQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERKDVNLDLIKV DGKVGGKLEDTELIYGIVVDKDMSHPQMPKQIQDANIAILTCPFEPPKPKTKHKVDIDTVEKFETLRRQEQQYFDDMVQKCKDVGATLVICQWGFDDEAN HLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVKEKAFGTTKDRMLYIEHCANSRAVTIFIRGGNKMMVEETKRSIHDALCVARN LIRNNSIVYGGGSAEISCSIAVEAAADRYPGVEQYAIRAFADALDAVPMALAENSGLQPIETLSAVKSQQIKENNPHCGIDCNDVGTTDMREQDVFETLI GKQQQILLATQVVKMILKIDDVISPSEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10006240 [exp]	0	1
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10003171 [exp]	1.4	0.9365
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10038216 [exp]	1.4	0.9214
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10038750 [exp]	6.0	0.8989
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10030794 [exp]	8.1	0.9206
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10015078 [exp]	8.5	0.9010
AT5G03160		ATP58IPK	homolog of mamallian P58IPK (....		Lus10023181 [exp]	10.5	0.8971
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	11.6	0.9134
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029954 [exp]	11.8	0.8939
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10009039 [exp]	11.8	0.9016
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10013271 [exp]	12.5	0.9159

Compare expression of checked genes

Lus10006240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.