Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67750 364 / 4e-124 Pectate lyase family protein (.1) AT5G63180 361 / 2e-122 Pectin lyase-like superfamily protein (.1) AT4G13710 339 / 2e-113 Pectin lyase-like superfamily protein (.1.2) AT3G07010 334 / 3e-112 Pectin lyase-like superfamily protein (.1) AT3G24670 333 / 2e-111 Pectin lyase-like superfamily protein (.1) AT4G24780 328 / 5e-110 Pectin lyase-like superfamily protein (.1.2) AT1G04680 320 / 2e-106 Pectin lyase-like superfamily protein (.1) AT3G24230 319 / 7e-106 Pectate lyase family protein (.1) AT4G13210 309 / 9e-103 Pectin lyase-like superfamily protein (.1.2) AT5G48900 308 / 4e-102 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036946 [exp] 421 / 3e-146 AT5G63180 627 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10006456 [exp] 363 / 1e-123 AT1G67750 625 / 0.0 Pectate lyase family protein (.1) Lus10011400 [exp] 363 / 2e-123 AT1G67750 623 / 0.0 Pectate lyase family protein (.1) Lus10033037 [exp] 340 / 1e-114 AT5G63180 671 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 336 / 1e-112 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 336 / 1e-112 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 335 / 4e-112 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10014887 [exp] 326 / 4e-109 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022310 [exp] 325 / 8e-109 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G087800 [exp] 357 / 4e-121 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.012G091500 [exp] 355 / 9e-121 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.008G182200 [exp] 348 / 8e-118 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.001G339500 [exp] 337 / 2e-113 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 333 / 2e-111 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.003G175900 [exp] 321 / 2e-106 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 319 / 6e-106 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.002G238800 [exp] 317 / 6e-105 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 310 / 2e-102 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.011G093400 [exp] 288 / 2e-94 AT5G63180 509 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10006241 pacid=23139718 polypeptide=Lus10006241 locus=Lus10006241.g ID=Lus10006241.BGIv1.0 annot-version=v1.0 ATGGCAACCAAACACTCCCTTATTCTTCTTCATCTTCTTCTTCTTCACTTCTCATCCTACATTTCCTCTTCTCCCGTTCCAGATCCTGAGCTTGTTGCTG AAGAAGTCCACAGACCGGCAACCCGATCGACGACTGCTGGAGATACGACCAAAACTGGCACAAGAACCGAAAGCGGCTCGTGGACTGTGCGATCGGGTTC GGCAAGAACGCGATCGGCGGCCGCGATGGCATCGTCACCGACTCCAGCCCTACGTTACGCTGCGATGCAGGACAGGCCGCTCTGGATCTTGTTCGCAAGG GACATGGTGATCAAGCTCAAAGCCGAGCTGATGATGAACTCCTTCAAGACCATCGACGGCAGGGGCTACTCTGTCCACATCGCCGGCGGCCCCTGCATCA CGACCCAGTACGTGACCAATGTGATCATCCACGGGATCAACGTCCACGACTGCAAGCAAGGCGGGAACACCTACGTGAGGGATTCCCCCACTCATTACGG GTACAGGACGATCTCGGATGGGGACGGGATCTCGATCTTCGGAGGAAGTCATGTGTGGATCGACCATGTCTCGCTGTCGAACTGTAACGACGGGTTGATC GACACGATTCATGGGTCGACCGCGATCACTATTTCGAACTGTTACATGACGCATCATAACAAGGTTATGTTGTTGGGTCATAATGACGATTTCACTAGGG ATAAGATCATGCAGGTTACCATCGCGTTTAACCATTTCGGCGAAGGGCTCGTTCAGAGGATGCCTAGGAACGGATATTTCCATGTTGTGAACGACTATAC TCGGTGGAAAATGTATGCGATTGGTGGGAGTGTGGTGAACGACTATACTCGGTGGCAAATGTATGCGATTGGTGGGAGTGCTGATCCGGCGATTAATAGT CAAGAAACCGGTTTCTGGGTGACGAAGTATAAGATAGCACCGGAGAGCGAATGGAGGAAGTGGAACTGGAGGTCGCAAGGGGACTTGTTCCGGAACGGGG TGTTCTTCACCACGACTGGTGAGGGAGCTTCTTTGAGCTACGTGAGGGCATCGAGTTTGGGAGCGAAGCGTCTTCGATCGTTGGTTCGATCACGGCCGGG GCTGGGTCGTTGCCTTGCAAGAGGGGTAGACGCTGCTGATGAAGGGATAATACGCAACAGATAA
AA sequence Show only first row Show all	>Lus10006241 pacid=23139718 polypeptide=Lus10006241 locus=Lus10006241.g ID=Lus10006241.BGIv1.0 annot-version=v1.0 MATKHSLILLHLLLLHFSSYISSSPVPDPELVAEEVHRPATRSTTAGDTTKTGTRTESGSWTVRSGSARTRSAAAMASSPTPALRYAAMQDRPLWILFAR DMVIKLKAELMMNSFKTIDGRGYSVHIAGGPCITTQYVTNVIIHGINVHDCKQGGNTYVRDSPTHYGYRTISDGDGISIFGGSHVWIDHVSLSNCNDGLI DTIHGSTAITISNCYMTHHNKVMLLGHNDDFTRDKIMQVTIAFNHFGEGLVQRMPRNGYFHVVNDYTRWKMYAIGGSVVNDYTRWQMYAIGGSADPAINS QETGFWVTKYKIAPESEWRKWNWRSQGDLFRNGVFFTTTGEGASLSYVRASSLGAKRLRSLVRSRPGLGRCLARGVDAADEGIIRNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63180			Pectin lyase-like superfamily ...		Lus10006241 [exp]	0	1
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	2.2	0.9076
					Lus10017767 [exp]	2.2	0.8886
AT5G03810			GDSL-like Lipase/Acylhydrolase...		Lus10035585 [exp]	2.4	0.9072
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10031578 [exp]	3.5	0.8860
AT1G09170			P-loop nucleoside triphosphate...		Lus10020682 [exp]	6.3	0.9075
AT5G27000		KATD, ATK4	KINESIN-LIKE PROTEIN IN ARABID...		Lus10029865 [exp]	7.7	0.8983
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10006065 [exp]	8.0	0.8653
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10029506 [exp]	11.0	0.8470
					Lus10030082 [exp]	11.5	0.8122
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10042025 [exp]	12.7	0.8331

Compare expression of checked genes

Lus10006241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.