Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26100 718 / 0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT3G15430 144 / 2e-37 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT5G63860 120 / 3e-29 UVR8 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) AT5G16040 117 / 2e-28 Regulator of chromosome condensation (RCC1) family protein (.1) AT3G02510 109 / 8e-26 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) AT1G76950 97 / 6e-21 PRAF1 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G19420 96 / 2e-20 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) AT5G12350 95 / 4e-20 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT5G42140 89 / 2e-18 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) AT3G47660 89 / 3e-18 Regulator of chromosome condensation (RCC1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006455 [exp] 752 / 0 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10011399 [exp] 735 / 0 AT3G26100 805 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10036945 [exp] 623 / 0 AT3G26100 565 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10033543 [exp] 116 / 3e-28 AT3G02510 648 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10039618 [exp] 112 / 2e-26 AT5G63860 715 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10017581 [exp] 111 / 2e-26 AT3G02510 636 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Lus10029536 [exp] 100 / 3e-22 AT5G63860 642 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Lus10037192 [exp] 100 / 9e-22 AT1G69710 986 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1) Lus10036737 [exp] 96 / 2e-20 AT1G69710 974 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G018600 [exp] 809 / 0 AT3G26100 798 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.015G009400 [exp] 802 / 0 AT3G26100 809 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.001G402800 [exp] 158 / 1e-42 AT3G15430 723 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.011G121900 [exp] 146 / 3e-38 AT3G15430 743 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1), Regulator of chromosome condensation (RCC1) family protein (.2) Potri.017G113200 [exp] 122 / 2e-30 AT5G16040 676 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.004G101800 [exp] 118 / 5e-29 AT5G16040 665 / 0.0 Regulator of chromosome condensation (RCC1) family protein (.1) Potri.007G100200 [exp] 117 / 2e-28 AT5G63860 738 / 0.0 UVB-RESISTANCE 8, Regulator of chromosome condensation (RCC1) family protein (.1) Potri.001G276900 [exp] 97 / 5e-21 AT5G19420 1483 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.009G071800 [exp] 94 / 6e-20 AT5G19420 1610 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1), Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.2) Potri.005G190000 [exp] 92 / 2e-19 AT5G42140 1407 / 0.0 Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00415 [flax] [poplar] RCC1 Regulator of chromosome condensation (RCC1) repeat
Representative CDS sequence Show only first row Show all	>Lus10006242 pacid=23139689 polypeptide=Lus10006242 locus=Lus10006242.g ID=Lus10006242.BGIv1.0 annot-version=v1.0 ATGGACGCCACAACAAGTGGGACGCCGACAGTTCAATATATGAACGTATCAGAACAACAACAATCCATCACTACTGCAATCGTTGTGTCAACTGCTTCCA CATTCCAAAGAAACTTACGCCATTGTTATGGTGGAGGAACAACTCCTGGAGAGTTCCCCTTAGCAGCTAGCCCTTCCATTGTTCTCCATGTCCTCACCGC TTGTAATTTGGACCCTCAAGACCTTGCCAAACTTGAGGCAAAGCTTGCTGCTCTCGACATGTGCAAGAAGAGGGCGATCTTCAAGCCAATGACTCCCGAC GAGCTTCGCGAGTTGAAACAAAGGTGTGGAGGGTCATGGAAATTGGTGCTGAGGTTCTTACTTGCTGGTGAAGCTTGTTGTAGGAGGGAGAAGTGTCAGG CAATAGCTGGACCTGGTCATAGCATTGCTGTCACTTCTGCAGGTGTAGTTTACTCGTTCGGCTCAAATAGCTCCGGACAACTCGGGCATGGCACCACCGA AGAGGAATCACAGCCTCGTGTAGTCAGATCCTTGCAAGGTATAAGGATCATTCAAGCAACTGCTGGACCGGGGAGGACAATGCTGATCAGTGATGCTGGC CGAGTTTACACGTTCGGGAAGGACTCGTATGGAGATGCTGAGTATGGAGTCCAGGGGTCTAAAATGATCACAACTCCACAAGTGATTGAGTCTTTGAAGG ACATATTTGTTGTGCAAGCTACCATTGGGAACTTCTTTACTGCTGTATTGTCTAGGGAAGGTAGGGTTTACACATTTGCTTGGGGCAATGATGCCAAACT CGGTCACCAAACCGATCCGAATGATGTGGAGCCTCACCCTTTGCTTGGTGCACTTGAGAACATTCCTGTGGTACAAATTGCAGCTGGATATTGCTACCTT CTTGCTCTTGCCTGCCAACCTACCGGCATGTCTGTTTATTCGGTTGGATGTGGATTAGGCGGGAAGCTGGGACACGGGTCGAGAACTGATGAGAAGCACC CTCGACTAATCGAGCAATTACAGGAACTGAACCTCCAACCCACGGTAGTTTCAGCCGGTGCTTGGCACTCAGCTGTAGTGGGACGAGATGGAAGAGTATG CACTTGGGGGTGGGGGCGTTACGGCTGCTTAGGCCACGGGAACGATGAATGCCAGTCTGTTCCTAAGGTCGTGGAGGCTCTCAGCAATGTGAAAGCAGTT CATGTAGCTACAGGTGACTACACCACGTTCGTGGTCTCGGAAGAAGGAGATGTGTATTCTTTTGGCTGTGGCGATTCTTCTAGCCTCGGACGCAATGGCG TTGTCGATGAACAGGCCGATAATGCACATGTGTTAAGCCCTGAGCTTGTGACATCCCTAAAGGAAGTGAATGAGAGAGTGGTTCACATCAGCTTGACCAA CTCGATCCAGTGGAACGCTCACACATTCGCGCTGACCGAGTCAGGAAAACTGTACGGGTTCGGAGCAGGAGACAAAGGGCAGCTTGGAGTAGAACTCGCG AACAACCAGACAGAAAGGGGGAACCCAGAAAGGGTGGATCTTGATCTGAGTTAG
AA sequence Show only first row Show all	>Lus10006242 pacid=23139689 polypeptide=Lus10006242 locus=Lus10006242.g ID=Lus10006242.BGIv1.0 annot-version=v1.0 MDATTSGTPTVQYMNVSEQQQSITTAIVVSTASTFQRNLRHCYGGGTTPGEFPLAASPSIVLHVLTACNLDPQDLAKLEAKLAALDMCKKRAIFKPMTPD ELRELKQRCGGSWKLVLRFLLAGEACCRREKCQAIAGPGHSIAVTSAGVVYSFGSNSSGQLGHGTTEEESQPRVVRSLQGIRIIQATAGPGRTMLISDAG RVYTFGKDSYGDAEYGVQGSKMITTPQVIESLKDIFVVQATIGNFFTAVLSREGRVYTFAWGNDAKLGHQTDPNDVEPHPLLGALENIPVVQIAAGYCYL LALACQPTGMSVYSVGCGLGGKLGHGSRTDEKHPRLIEQLQELNLQPTVVSAGAWHSAVVGRDGRVCTWGWGRYGCLGHGNDECQSVPKVVEALSNVKAV HVATGDYTTFVVSEEGDVYSFGCGDSSSLGRNGVVDEQADNAHVLSPELVTSLKEVNERVVHISLTNSIQWNAHTFALTESGKLYGFGAGDKGQLGVELA NNQTERGNPERVDLDLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	0	1
AT1G56090			Tetratricopeptide repeat (TPR)...		Lus10031774 [exp]	3.9	0.9581
AT1G04970			lipid-binding serum glycoprote...		Lus10014625 [exp]	4.0	0.9627
AT3G30390			Transmembrane amino acid trans...		Lus10031964 [exp]	4.2	0.9555
AT1G44770			unknown protein		Lus10014131 [exp]	4.4	0.9633
AT5G41630			F-box/RNI-like superfamily pro...		Lus10011268 [exp]	4.7	0.9515
AT3G26890			unknown protein		Lus10031999 [exp]	5.0	0.9438
AT1G62040		ATG8C	autophagy 8c, Ubiquitin-like s...		Lus10015563 [exp]	5.3	0.9593
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Lus10023358 [exp]	5.9	0.9403
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Lus10019755 [exp]	6.2	0.9599
AT1G18470			Transmembrane Fragile-X-F-asso...		Lus10032471 [exp]	6.5	0.9487

Compare expression of checked genes

Lus10006242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.