Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67740 70 / 3e-15 YCF32, PSBY photosystem II BY (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052000 [exp] 93 / 6e-24 AT1G67740 101 / 7e-27 photosystem II BY (.1) Potri.008G181900 [exp] 85 / 4e-21 AT1G67740 100 / 2e-26 photosystem II BY (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06298 [flax] [poplar] PsbY Photosystem II protein Y (PsbY)
Representative CDS sequence Show only first row Show all	>Lus10006243 pacid=23139723 polypeptide=Lus10006243 locus=Lus10006243.g ID=Lus10006243.BGIv1.0 annot-version=v1.0 ATGGTAGCAGCGATGACGACCATGGCGATGCTCAACGCCAAGTGCCTGAACTTGAACAAGCCCCATATCTCAGTCCCCACAGCCAAACTCCCACAACTAT CAAAACCCATCTCCCTCTCCTCAATCCCCACCATACCCAGATCGCTCATTTCCAGCTCCGCCATCGCCGGCGCGGTGTTCTCCGCAATCGGGTCGTCCGA CCCTGCCTTCGCCGCCCAGCAGATCGCCGCCATCGCCGACGGCAGCGGCGACAACAGGGGTATCGCTCTCCTGCTTCCCCTGATTCCGGCCATCGCCTGG GTCCTGTTCAACATCCTGCAGCCGGCGCTGAACCAGATCAACCGGATGCGGGAGACCAAAGGCGTGGTCGTCGGGCTCGGGTTGGGCGGCGGAATCGCCG GGCTGCTGGCGGCGACGGCTCCCGAGGCGTCAGCTGCGGCTGCGGAGGCGGCCCCCCCTGGGAGCGGCTGTGGTTTTGTAAGCTTGTAG
AA sequence Show only first row Show all	>Lus10006243 pacid=23139723 polypeptide=Lus10006243 locus=Lus10006243.g ID=Lus10006243.BGIv1.0 annot-version=v1.0 MVAAMTTMAMLNAKCLNLNKPHISVPTAKLPQLSKPISLSSIPTIPRSLISSSAIAGAVFSAIGSSDPAFAAQQIAAIADGSGDNRGIALLLPLIPAIAW VLFNILQPALNQINRMRETKGVVVGLGLGGGIAGLLAATAPEASAAAAEAAPPGSGCGFVSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Lus10006243 [exp]	0	1
AT2G34620			Mitochondrial transcription te...		Lus10032120 [exp]	1.0	0.9370
AT1G74470			Pyridine nucleotide-disulphide...		Lus10021665 [exp]	2.8	0.9303
AT2G34620			Mitochondrial transcription te...		Lus10014567 [exp]	3.2	0.9115
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10022514 [exp]	3.5	0.9045
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10023322 [exp]	3.9	0.9155
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10023383 [exp]	5.2	0.9077
AT1G18060			unknown protein		Lus10041995 [exp]	7.7	0.9021
AT3G12780		PGK1	phosphoglycerate kinase 1 (.1)		Lus10031168 [exp]	10.2	0.9136
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10018961 [exp]	10.4	0.9107
AT1G31330		PSAF	photosystem I subunit F (.1)		Lus10018273 [exp]	10.6	0.9088

Compare expression of checked genes

Lus10006243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.