Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04720 51 / 6e-08 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036944 [exp] 242 / 2e-82 AT3G04720 62 / 7e-12 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10026915 [exp] 86 / 1e-20 AT3G04720 66 / 5e-13 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10020111 [exp] 85 / 2e-20 AT3G04720 45 / 8e-06 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10020113 [exp] 77 / 3e-17 AT3G04720 52 / 6e-08 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10026916 [exp] 77 / 3e-17 AT3G04720 49 / 4e-07 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006552 [exp] 71 / 3e-15 AT3G04720 244 / 1e-82 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10003265 [exp] 67 / 6e-14 AT3G04720 202 / 8e-67 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10006556 [exp] 62 / 2e-12 AT3G04720 186 / 1e-60 HEVEIN-LIKE, pathogenesis-related 4 (.1) Lus10005595 [exp] 61 / 1e-11 AT3G04720 65 / 8e-13 HEVEIN-LIKE, pathogenesis-related 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G041900 [exp] 78 / 3e-18 AT3G04720 251 / 1e-85 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.005G054000 [exp] 69 / 1e-14 AT3G04720 238 / 9e-81 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041700 [exp] 67 / 4e-14 AT3G04720 248 / 4e-84 HEVEIN-LIKE, pathogenesis-related 4 (.1) Potri.013G041600 [exp] 61 / 9e-12 AT3G04720 266 / 3e-91 HEVEIN-LIKE, pathogenesis-related 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0199 [flax] [poplar] DPBB PF00967 [flax] [poplar] Barwin Barwin family
Representative CDS sequence Show only first row Show all	>Lus10006244 pacid=23139731 polypeptide=Lus10006244 locus=Lus10006244.g ID=Lus10006244.BGIv1.0 annot-version=v1.0 ATGCGAATAGTGGCTCTGGTTTCGGTACTGTTATTGGTGGTTGCTAATGGTGAATCCCGTGATCACAAGTGCACCTGCCAGCGCTACAGAGATATGTGCA ACCAAGGTGACGTTGGTGCTGGACGATGCTGTAGCACGCATGGATATTGCGGTTCTACCGATTGCCCGCCTGATCCTGCTGCTGTTAGAACCGGCCTACT GGTTGCAGCCACCTACAACAACGACCACAATCTTATCCCTCAAGCCTCTGTCCACGAAAACATGTCGGTTGCATGGCGTAGGAGTCACGGTTGGGTGAGC AGCTGCATGCCGTCAACAGTTGAAACAGATCGTGTCCAGGGTCGACAGTGCTTAAAGGTAACTAATAGCGAGAATGGGAAAGAAGCAGTAGTGAGAATTG TGGAGAAAGAGTGTAGATCAAGCAACACACGTACTAGTTTGGAGTTGGACTATGTTGTTTTCCAACGTCTCGACCAAAGTGGTAACAGAAATAATGTAAG AGGACACCTACCGGTCTCCTACTACTATGTGTATTGTATCGAATAG
AA sequence Show only first row Show all	>Lus10006244 pacid=23139731 polypeptide=Lus10006244 locus=Lus10006244.g ID=Lus10006244.BGIv1.0 annot-version=v1.0 MRIVALVSVLLLVVANGESRDHKCTCQRYRDMCNQGDVGAGRCCSTHGYCGSTDCPPDPAAVRTGLLVAATYNNDHNLIPQASVHENMSVAWRRSHGWVS SCMPSTVETDRVQGRQCLKVTNSENGKEAVVRIVEKECRSSNTRTSLELDYVVFQRLDQSGNRNNVRGHLPVSYYYVYCIE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006244 [exp]	0	1
AT5G18470			Curculin-like (mannose-binding...		Lus10003099 [exp]	1.7	0.9792
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10013055 [exp]	1.7	0.9905
					Lus10010397 [exp]	2.0	0.9879
					Lus10020194 [exp]	4.0	0.9767
AT5G13240			transcription regulators (.1)		Lus10034638 [exp]	4.2	0.9710
AT5G45650			subtilase family protein (.1)		Lus10002780 [exp]	4.7	0.9573
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Lus10007367 [exp]	4.9	0.9547
AT5G52390			PAR1 protein (.1)		Lus10016450 [exp]	5.3	0.9659
AT1G17960			Threonyl-tRNA synthetase (.1)		Lus10030644 [exp]	5.5	0.9740
					Lus10020641 [exp]	6.9	0.9643

Compare expression of checked genes

Lus10006244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.