Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24480 327 / 7e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G24805 308 / 2e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G16030 109 / 5e-29 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G01710 112 / 2e-28 methyltransferases (.1) AT4G26730 89 / 2e-21 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G53400 73 / 1e-14 unknown protein AT5G03190 54 / 3e-08 CPuORF47 conserved peptide upstream open reading frame 47 (.1.2.3) AT1G20330 42 / 0.0002 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036941 [exp] 423 / 1e-151 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10013662 [exp] 300 / 6e-103 AT4G24805 299 / 1e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10022081 [exp] 210 / 1e-65 AT1G20960 218 / 1e-68 embryo defective 1507, U5 small nuclear ribonucleoprotein helicase, putative (.1.2) Lus10039718 [exp] 117 / 5e-32 AT2G16030 267 / 7e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018506 [exp] 115 / 4e-31 AT2G16030 269 / 9e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012217 [exp] 108 / 1e-26 AT5G01710 733 / 0.0 methyltransferases (.1) Lus10014232 [exp] 107 / 2e-26 AT5G01710 697 / 0.0 methyltransferases (.1) Lus10001267 [exp] 105 / 1e-25 AT5G01710 737 / 0.0 methyltransferases (.1) Lus10022682 [exp] 87 / 4e-19 AT5G01710 698 / 0.0 methyltransferases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052100 [exp] 320 / 4e-111 AT1G24480 327 / 5e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G088400 [exp] 310 / 4e-107 AT1G24480 302 / 3e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.013G152100 [exp] 111 / 1e-29 AT2G16030 225 / 1e-74 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G125300 [exp] 99 / 8e-25 AT2G16030 197 / 2e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.016G128100 [exp] 96 / 2e-22 AT5G01710 740 / 0.0 methyltransferases (.1) Potri.006G105100 [exp] 94 / 8e-22 AT5G01710 720 / 0.0 methyltransferases (.1) Potri.013G153300 [exp] 86 / 5e-19 AT5G01710 498 / 1e-173 methyltransferases (.1) Potri.006G128800 [exp] 71 / 7e-14 AT3G53400 418 / 3e-143 unknown protein Potri.016G088900 [exp] 67 / 2e-12 AT3G53400 420 / 6e-144 unknown protein Potri.011G128300 [exp] 42 / 0.0004 AT5G54400 450 / 1e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10006247 pacid=23139719 polypeptide=Lus10006247 locus=Lus10006247.g ID=Lus10006247.BGIv1.0 annot-version=v1.0 ATGAAGCAAAACCCACCGCCGATCCTCAAATACTTCCTCATCACCTTATTCCTCTCCCTCCCACTCCTCCTCTTCCTCTTCCCCCTCAACCACCACCCCC ACCCACAACCCCAACCGTTAACTCCCGGTATCCGGATCCGACCCGGATACACCACCTACGAATCCTACATCAACCGCCAGCTCAACAAGACCCTCAACCC CAAACTCCGCCGGGTATGGAAGACCCGCGACTGGGACCGCAAAATCAACGTCTTCTCCAAATTCTTCGCCCGCCTCAAATCCGAAAACCTCCTCTCCAAC CACTCAAAATCCCTCTGCGTCGGGGCTCGGGTCGGGCAGGAGGTGGAGGCTTTAAAACGGGTCGGAGTGTCCGACTCGATCGGGATCGACCTCGTCCCTT CCCCGCCGTTGGTTGTGAAGGGAGATTTTCATTCTCAGCCGTTCGATGACGAGACGTTTGACTTTGAATTCTCGAATGTGTTTGATCACGCGCTTTATCC GGAGAAGTTCGTCGGGGAGATTGAGCGGACGTTGAAGCCCGGTGGGGTGTGTGTCCTCCACGTGGCGGTGTCGCGGAGGTCGGATAAGTACTCGGCGAAT GATGTGATTAGACTGGAGGCGGTGGTGGAGATGTTTAAGATGTCGGAGGTTGTTTATCGCCGGAAAGTTGATGGGTTCGGGTTGGATACGGAGATTGTGT TTAGGAAGAAGGTGAAGCCGGCGGCGGCGGTGGGTGGATTAACGGACGTTAAAGCGTCACGGTTACGATGA
AA sequence Show only first row Show all	>Lus10006247 pacid=23139719 polypeptide=Lus10006247 locus=Lus10006247.g ID=Lus10006247.BGIv1.0 annot-version=v1.0 MKQNPPPILKYFLITLFLSLPLLLFLFPLNHHPHPQPQPLTPGIRIRPGYTTYESYINRQLNKTLNPKLRRVWKTRDWDRKINVFSKFFARLKSENLLSN HSKSLCVGARVGQEVEALKRVGVSDSIGIDLVPSPPLVVKGDFHSQPFDDETFDFEFSNVFDHALYPEKFVGEIERTLKPGGVCVLHVAVSRRSDKYSAN DVIRLEAVVEMFKMSEVVYRRKVDGFGLDTEIVFRKKVKPAAAVGGLTDVKASRLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24480			S-adenosyl-L-methionine-depend...		Lus10006247 [exp]	0	1
AT4G11680			Zinc finger, C3HC4 type (RING ...		Lus10006313 [exp]	4.1	0.8341
AT5G46170			F-box family protein (.1)		Lus10023298 [exp]	7.1	0.8092
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Lus10001435 [exp]	7.5	0.8067
AT2G17760			Eukaryotic aspartyl protease f...		Lus10041865 [exp]	10.6	0.7756
AT4G19670			RING/U-box superfamily protein...		Lus10038341 [exp]	15.2	0.8067
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10002257 [exp]	16.4	0.8274
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10038582 [exp]	18.4	0.7636
AT1G05270			TraB family protein (.1)		Lus10031571 [exp]	20.9	0.7104
AT4G08300			nodulin MtN21 /EamA-like trans...		Lus10003738 [exp]	27.0	0.7537
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10039024 [exp]	28.8	0.6791

Compare expression of checked genes

Lus10006247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.