Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26085 244 / 3e-80 CAAX amino terminal protease family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036938 [exp] 451 / 2e-145 AT1G24460 838 / 0.0 TGN-localized SYP41 interacting protein, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G181400 [exp] 283 / 5e-95 AT3G26085 308 / 1e-104 CAAX amino terminal protease family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0472 [flax] [poplar] Peptidase_U PF02517 [flax] [poplar] CPBP CPBP intramembrane metalloprotease
Representative CDS sequence Show only first row Show all	>Lus10006251 pacid=23139704 polypeptide=Lus10006251 locus=Lus10006251.g ID=Lus10006251.BGIv1.0 annot-version=v1.0 ATGTCTTTGACGATCGGGTTAAGCTATTTCAGCACCACCTCTGCTCTCCTACCATGGCGGCGGCGAAGCTTCCACCACTCTAGGGGGATTCCGAAGTTTC GAACAAAGGCGTCTGGTAAACGGAAGGTGTTGAAGAAGAAGAAACAACGGATAGACGAAGAAGAACAATCACAACCAGCCATAGTTTCTACTGATAAGGG ATTTGGATACGAAACTCAGCCTCCGGAGGCAAATGGGTCTGATTCTGAGCTGCAGAAGGTCAGCTATGGTGAGATTGCTGTTCCTTCTAAGGGAGCTGTG ATTCAGGCTTGCACTCTCACTTCTGGGTTCATTGCTGGCTTCGGGATATTACTTCGACAGGTTTCTCATGTTGCTGCGGAGGAAGGATTGCCGATTCTTG ATTGCTCAGAACAAGTCTCTTTTGGTTTCCAAATTTGGCACCTTGGCTTGATTCTTGGTCTGGTTTTGCTTATATCGTCATCTCGGTACTTGCTGCTGAA AGCGTGGCCAGATTTCGCTGAGTCATCTGAAGCAGCAAACCGGCAGGTTCTATCATCACTTGAGCCACTGGATTACTTACTGGTTGCATTTCTGCCTGGA ATTAGCGAGGAGCTTCTTTTCCGCGGAGCCTTACAGCCGCTCTTTGGAATGGACTGGAAGAGTGTTCTTGTCGTTGCTGCCATTTTCGGGGTTCTGCACC TTGGAAATGGCCGGAAGTACTCCTTTGCTGTCTGGGCAACTTTTGTTGGTTGCATCTATGGCTACTCCGCAATCGCATCCTCGAGCATAATTGTGCCAAT GGCTTCCCACGCATTGAACAACCTCGTTGGAGGGCTCTTGTGGCGCAACAGCCAGGTCTCGAAGCTCTCAAAGTAG
AA sequence Show only first row Show all	>Lus10006251 pacid=23139704 polypeptide=Lus10006251 locus=Lus10006251.g ID=Lus10006251.BGIv1.0 annot-version=v1.0 MSLTIGLSYFSTTSALLPWRRRSFHHSRGIPKFRTKASGKRKVLKKKKQRIDEEEQSQPAIVSTDKGFGYETQPPEANGSDSELQKVSYGEIAVPSKGAV IQACTLTSGFIAGFGILLRQVSHVAAEEGLPILDCSEQVSFGFQIWHLGLILGLVLLISSSRYLLLKAWPDFAESSEAANRQVLSSLEPLDYLLVAFLPG ISEELLFRGALQPLFGMDWKSVLVVAAIFGVLHLGNGRKYSFAVWATFVGCIYGYSAIASSSIIVPMASHALNNLVGGLLWRNSQVSKLSK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26085			CAAX amino terminal protease f...		Lus10006251 [exp]	0	1
AT4G38060			unknown protein		Lus10032845 [exp]	3.2	0.8675
AT1G21410		SKP2A	F-box/RNI-like superfamily pro...		Lus10028645 [exp]	3.2	0.8612
AT3G09085			Protein of unknown function (D...		Lus10021128 [exp]	3.5	0.8508
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10034213 [exp]	4.0	0.8625
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	4.5	0.8724
AT1G13990			unknown protein		Lus10036787 [exp]	5.5	0.8626
AT1G19800		ABCI14, TGD1	ATP-binding cassette I14, trig...		Lus10002636 [exp]	13.9	0.8299
AT3G10210			SEC14 cytosolic factor family ...		Lus10035431 [exp]	14.3	0.8604
AT5G40760		G6PD6	glucose-6-phosphate dehydrogen...		Lus10014614 [exp]	14.8	0.8386
AT1G48840			Plant protein of unknown funct...		Lus10020973 [exp]	15.8	0.8560

Compare expression of checked genes

Lus10006251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.