Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24460 880 / 0 TNO1 TGN-localized SYP41 interacting protein, unknown protein AT4G31570 74 / 1e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036938 [exp] 3021 / 0 AT1G24460 838 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10006450 [exp] 1860 / 0 AT1G24460 902 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Lus10011394 [exp] 910 / 0 AT1G24460 415 / 3e-126 TGN-localized SYP41 interacting protein, unknown protein Lus10011393 [exp] 716 / 0 AT1G24460 375 / 7e-112 TGN-localized SYP41 interacting protein, unknown protein Lus10020133 [exp] 96 / 3e-19 AT4G31570 1315 / 0.0 unknown protein Lus10026934 [exp] 72 / 5e-12 AT4G31570 680 / 0.0 unknown protein Lus10009250 [exp] 0 / 1 AT1G24460 80 / 1e-21 TGN-localized SYP41 interacting protein, unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G052600 [exp] 1595 / 0 AT1G24460 1116 / 0.0 TGN-localized SYP41 interacting protein, unknown protein Potri.018G008600 [exp] 111 / 4e-24 AT4G31570 1464 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006252 pacid=23139683 polypeptide=Lus10006252 locus=Lus10006252.g ID=Lus10006252.BGIv1.0 annot-version=v1.0 ATGTCCGGCAGCATAGACGGCGAACACGAGCCCTTTACTGGCGAGCAGGATCAAGTCGGAGAAGCCGAATCAAACGAAGGAGCTGATGCAAATCTCGAAA CTCCGACCGATCAGGGAGAAGATTTGTTTCGGACTCCGGTTGTGGAGAGCAGGGATGACATGTTCGTCGATGCAACTGGTGACGACGATGTTCACGACGG TCAGTTCCAGGAGCCGAAGAATGGAAATGGTTCGAAGGATGAGTCGGAGAAAGAGCAGGAGGAGAATGAGTGGAAGGAGGAGAGGGAGGGATTTGTTAGG GAAGTTGCTGGTCTGCGAAATGAGCTGAGAGGTTTTGTCGATGGACGGTTAGTGGATGACGATCAAAGTGAGGAGTCGTTGCGAGAGATGGTTAATGAGT GCTCGAATTCGGTTAAATTTGCTTTAGAGCAGAGGCTAGAGGACGAGAAGAGGATGGATGAACTTCATAAAGACATTGAAGAGCTGAATGTGAAGGTCCA GGGGGATCAGAATGTGGAGGTTGTCGTGGATAGGTTGATGTCATTGCTTGGTAAGGTGGTTGATCCAGGAGACATGATGGATGATTCTGTTGTTGGGAAA ATTGGCTACGTTGAAAGAAGTGCTGTCTTGTTGATGGAACAAAATAAGTCGATTCTCCACGAAATCTATCAGATTAGAAGATCTATACACGAAGGAGGTT CAAATGTCGGTGAAGTAGACGGGGATTATGAGTGGCGGCCGTTTCTAGCAACTGTTAAAGCCGAGATTCTGGACCTGAAGATGAAAGAGGCGGATATGGT GGAAAAGCTGGCCCATTTAGAGGATCGAAACAGGAGATTGGTCGGAGAAGTGGAGTCGGAAAAGGCAGCTTCTTCAGAGCTGGAAAGGGTGAAAGAAGAA CTTGAGCGTGAAAAGGATAGGAATGCTAAAACCAAAGAAAAGCTTAGTATGGCCGTGACAAAGGGGAAGGCACTGGTTCAACAGCGTGATTCGCTGAAGC AATCTCTGGCCGAGAAGGCTAGCGAGCTTGAAAAATGTTTGACGGAGTTGCAAGAGAAAACAAGTGCAGTTGAAGCAGCTGAGCATTGTAAGGAGGAACT AGTTAAGCGTGAAAACTTGGTGTCATCATCGCAGAACTCTCTCTCTCAGAGAAATGCAATACTTGAAAGCATTGAAGCGATAGTGGCACAGACTTCTATA TCTGAAGATCTTCAACCAACAGATCTTGAAGGGAAGGTGAGGAGGATTGTAGATCAGGTGGGTTCATTGCAGGAAAGTATATCACAGCAGACAGTTGTGG TTGGCAATATTGAAGAAATTCTTTCTCAGACAACTGTTCCAGAGGAACTAAAATCGGCAGATATTATTGTGAGACTGAAGTGGCTTTTAGATTTAGCTAT ATCACTAAAGGAAACAATAGTTCAAATAAGTTTACCTGAGGAGGTTCAGTCAGAGGATATGGTTGGGAAATTGAAATGGCTTGCCGAGGACAGGCGTAAA ATTTCCAGTGATTTGCTTGAATTCCAGAAATTGAAAGATGCCTTAAGTCTTATTGATATGCCAGAAGCTGTCTCTTCTTCCGAATTGGTAGCTCAAATAG GTTGGCTTAAGGGATCAGTTGACCAGGCAAGAGATGTAGTTAACATGCTGGATGATGAAACTGCAAAAGCGAAGGAATCTGCCAGAAATGATCTGGACCA GTTGACTGCTTCAATTGCAGTGGAAATCCAAGAAAAGGAGCTTCTGAATGCAGAACTAAATGAACTAATGAGTAAGCACGAACAGATGGTGGAAAAGGAA CGTCAAGCTTTGTCAGATATAGATCAAATAATGAAGATGCTGGTAGAAGTTACTGGAGTCGAAACAGACGGTTTAGAAGGGTCCTATCCTAGTTACTCTG ATGTAAGCATGCTAGTTGGGAGATGCTTAGACAAGATAAAAGAAAAGAACAATGCTTCAGTTTCTGTTTCTCCTGCTGATGTTGAGGTCTATCATAGTAT GCAAAGCCACTTATATGTCAAGGATCAAGAATTGACGCTCTGTAAGACACTTCTCGAGGAGGATGAGCTGGTGAGATTACATGTACATAATCTATCAGAT TCCCTTAGAACAACATCTCAGGAGCTTGAAACATTGAGATCAGAAAAAGAATCTATGAAGAATGATCTCAACAGATCAGAAGAAAAATGCACCTTACTAA GGGAGAAGCTATCCTTGGCAGTTAAGAAAGGTAAGGGATTGGTGCAGGATAGAGAAAATTTGAAACTCCTTATGGATGGAAAGAAGTCTGAAATTGAAAA GTTGAAGCTTGAGGTACAGCAGCAGGAATCTGTGGTTGGTGAGTGCAGGGATCAGATAAACCGGTTATCTAGTGATTTGGGGCGAACTCAGAAGCTGGAA GCTGATCTTGATGCTGCAAAAGGTCAAAGAGATCAGTTCCAGCAGTTATTATTGGAGAGCAATAATACGCTGCATAAAGTAATGGAGTCTTTTGACCATA TTACTCTTCCTATTGGTTCCAATTTGGATGAACCTGTAGGGAAGATGAAGTCATTTGCAGACTACCTAAGCGAGTGCCAAACGGCTAAGAATCATCTAGA GCAAGAATTAGACGAAGTTAAGGAAGAATATATTGTTTTGACGAGTAAATTGGCAGAAGCCCACCAAACTCTCAAATCTGTAGAAGATGCATTGTCTGGT GCAGAGAATCAGATTTCAGAGCTAGAAGATGAAAAGAGAGCACTAGAGGCTGCAAAGAAGAATGTGGAACTAGACTTGCAAAAGGCTTTAGATGAAGTCA ATGCACGAACAAGCGAGGTCACTGAGGCTAATGCAGCGAGAAGCTCACTTGAAGATGCATTGTCGTTGGCAGAGAATAACATTGCAGTGCTTGTTAAAGA AAGAGAAGAAGCTCTACTTAGCAAGGCTGCTGTTGAAGCCGATTTAGAAAATGTAAGAGAGGAAGTGGATATTCGGTCTGAAAAATTGACTGATGCATAC AGATCTATGAAGTCTCTGGAAGACACACTCTCTGAGGCGGAAACCAAGGTAGCTTCACTGACTGAAGAAAACAATGGTTTCCAGGCTGGCAGAACCGAAT TGGAGAATGAGCTAAAGAAACTGAAATATGAAGCTGAGTCCCATGTAGGTAAGCTTGAAGATACCTCTTCAACCATTAAATTGTTGGAAGATGCTTTGTC GAAAGCTATGAATGACAATTCTGCATTTGAAGATGACAAGAGGATTGCTGAACAGGAAATTTCAACATTGAATACTAAGTTGAACGCTTGCATGGACCAG TTAGCCGGAACCAGTGGCAGCTTGGCTGGAAAATCTATGGAGTTAATCAGCCATCTAACTGATCTTCAGATGCTTACAAAGAGTGAAGGGTTGTTGTCTG TAATCAGACAACATTTTGAGAAGCAATATCAAAATCTTAACAGTATGGATCTCATACTCAACGACTGTTTTGCTTATGGAGATTCACAGATGCCGCAAAT TTCTACTGTCATGGATGATGCACATGCAAGAAAAGCTTTCCCACATGAAACTGGTAGGACTTTAAGTGCTGAAATGGAAAGTGGTGACGTTGTTTCAGCT GATTTGGACAATGTTTCGCTGTACTTTAAAAAGTTTAGTGATGGCTTACAGCTGAGGAACAGGATCCTGACTGAGAATTTTGAAGGACTGTCGAGCTTCA CAGATGAGTTTGCTGAAGCTCTGCTTAGCAAATTAAGGGTAACAAAGGATGCTATAATTCTTACCTTTGAGCGGATGGAGTCGATGAAACAGAAGATGAT GGACATGGAAACTAGTAAAGAAGAACAAGATAGAGCCTTTGCCTTGTTAGAAAAAGAGCGTAAAGTTCTCCTCTCTGCATGTGTCAATGCTACAAGTGAA CTGCAGTTTGAATCTGTGAACGGTCTGAGGGACCTGAAGTCTGTTCCTGAGCTTGAGAAGTTGAACAAGCTATTTCAGTTGGACAATAATGATACAGAAA ATCGGACAACGGAGGAGGATAGTGAAGACATAAAGATGGTAGAAAAGCTGTTATCAGCTACGAGAAAGGTTCGGAACCAGATTAGTTTGTTTGAACGTAC GAGTGAAGTGGCAGCTGCTGTGATAGAGAATCTGCAGAACAAGATGGAGGTTAGTGCAGAAACTTCTGAAAACTTCCTGAGAGAAAGGGATATACTTCAA AGTAAGGCTGTGGAGTTGGAGATGGAAGTAGGAGCACTGCAAAACTCGTGCCAGCAGCTGAGGGCCAAACTCGAAGACCATGAAAGCATCCAAAGAGAAA GGGACCTACTTCATAGTAGGGTTGCAGAGCTGGAGGCTGATGTAGACGCATCGCAAAATTCATGCCTGCAGTTACGAGCTGAGCTAGAGGCCTACAATGA CTCGGAGAAGAAATTGCACCAAAAAGAAGTAGAGCTTTCAACGTTACAAAGCAATTTGTTGATGAAAGAACAAGAAGCAACAGACGCCCTTATGTCAACA TCAGAACTGAGAACTCTCTTTGAAAAAATCCGTAGAATAGAAATGTTTAATTCAGGGTCAGAATTAGAATCACATACTTCATCCGATGTGAATAAACTAT TTTACGTAGTTGATAGTGTGGTGCAATTACAGAATCAAATAAATGCATCAGCATCAGAGAAAGATCAGCTACAGTCAGCGTTATCCAAGCAGATTCTTGA AATTGAGGTTCTGAAGGACGAAGTTAAAAGTCATAGCAGAAACCAACAGTATGTGGAAACGATTAAGGGTGAAATTTCTGAGATAACAGTTGGCTTGGAG AAAATACTTGATGTTTTCGGAGGTGATGAAGTTGTTTCAGATAAAAAACCTGGCAGTGCAAGTAGGCTTTTATCGCTGTTGGAAAAGCAGGTGAAGGCAT TGTTCTCGGACTCTGAAAATGCCAAGTCCCACGCTCAGGAGCTTGGTAACAGGTTGCTTGAGAGCCAGAAGGTCGTGGATGAATTGTCAACTACAGTCAA AGTGCTTGAAGATTCTGATCGAAGTAGAAGTGCATCACAACCTGAGATTTTCCAGGAAAGGAGTATGTTTGAAGCTCCATCTCCACCAAGTGGCTCGGAG ATATCCGAAGCTGAAGATGCTGGCTCCATCGGGAAGAACCCTCCAGCTCCAGTCCCGAAAGCTGCTCATGTCAGAACGACACGAAAGGGAGGATCGAGTG ACCACCTCGCAATCAGCATCGACTCAGAATCCGCCACTCTCATCAACAAGGAAGACATTGACGAAGACAAAGGTCACGCATTCAAGTCTCTCAACACATC TGGTTTCATCCCTAGGCAAGGGAAGTCGTTCGCAGACCGAGTTGACGGGATATGGGTATCTGGTGGTAGGAATCTAATGAGTCGTCCAAGAGCAAGACTT GGCTTGATTGCATATTGGCTTCTCTTGCACATGTGGCTATTAGCCACCATTTTGTAG
AA sequence Show only first row Show all	>Lus10006252 pacid=23139683 polypeptide=Lus10006252 locus=Lus10006252.g ID=Lus10006252.BGIv1.0 annot-version=v1.0 MSGSIDGEHEPFTGEQDQVGEAESNEGADANLETPTDQGEDLFRTPVVESRDDMFVDATGDDDVHDGQFQEPKNGNGSKDESEKEQEENEWKEEREGFVR EVAGLRNELRGFVDGRLVDDDQSEESLREMVNECSNSVKFALEQRLEDEKRMDELHKDIEELNVKVQGDQNVEVVVDRLMSLLGKVVDPGDMMDDSVVGK IGYVERSAVLLMEQNKSILHEIYQIRRSIHEGGSNVGEVDGDYEWRPFLATVKAEILDLKMKEADMVEKLAHLEDRNRRLVGEVESEKAASSELERVKEE LEREKDRNAKTKEKLSMAVTKGKALVQQRDSLKQSLAEKASELEKCLTELQEKTSAVEAAEHCKEELVKRENLVSSSQNSLSQRNAILESIEAIVAQTSI SEDLQPTDLEGKVRRIVDQVGSLQESISQQTVVVGNIEEILSQTTVPEELKSADIIVRLKWLLDLAISLKETIVQISLPEEVQSEDMVGKLKWLAEDRRK ISSDLLEFQKLKDALSLIDMPEAVSSSELVAQIGWLKGSVDQARDVVNMLDDETAKAKESARNDLDQLTASIAVEIQEKELLNAELNELMSKHEQMVEKE RQALSDIDQIMKMLVEVTGVETDGLEGSYPSYSDVSMLVGRCLDKIKEKNNASVSVSPADVEVYHSMQSHLYVKDQELTLCKTLLEEDELVRLHVHNLSD SLRTTSQELETLRSEKESMKNDLNRSEEKCTLLREKLSLAVKKGKGLVQDRENLKLLMDGKKSEIEKLKLEVQQQESVVGECRDQINRLSSDLGRTQKLE ADLDAAKGQRDQFQQLLLESNNTLHKVMESFDHITLPIGSNLDEPVGKMKSFADYLSECQTAKNHLEQELDEVKEEYIVLTSKLAEAHQTLKSVEDALSG AENQISELEDEKRALEAAKKNVELDLQKALDEVNARTSEVTEANAARSSLEDALSLAENNIAVLVKEREEALLSKAAVEADLENVREEVDIRSEKLTDAY RSMKSLEDTLSEAETKVASLTEENNGFQAGRTELENELKKLKYEAESHVGKLEDTSSTIKLLEDALSKAMNDNSAFEDDKRIAEQEISTLNTKLNACMDQ LAGTSGSLAGKSMELISHLTDLQMLTKSEGLLSVIRQHFEKQYQNLNSMDLILNDCFAYGDSQMPQISTVMDDAHARKAFPHETGRTLSAEMESGDVVSA DLDNVSLYFKKFSDGLQLRNRILTENFEGLSSFTDEFAEALLSKLRVTKDAIILTFERMESMKQKMMDMETSKEEQDRAFALLEKERKVLLSACVNATSE LQFESVNGLRDLKSVPELEKLNKLFQLDNNDTENRTTEEDSEDIKMVEKLLSATRKVRNQISLFERTSEVAAAVIENLQNKMEVSAETSENFLRERDILQ SKAVELEMEVGALQNSCQQLRAKLEDHESIQRERDLLHSRVAELEADVDASQNSCLQLRAELEAYNDSEKKLHQKEVELSTLQSNLLMKEQEATDALMST SELRTLFEKIRRIEMFNSGSELESHTSSDVNKLFYVVDSVVQLQNQINASASEKDQLQSALSKQILEIEVLKDEVKSHSRNQQYVETIKGEISEITVGLE KILDVFGGDEVVSDKKPGSASRLLSLLEKQVKALFSDSENAKSHAQELGNRLLESQKVVDELSTTVKVLEDSDRSRSASQPEIFQERSMFEAPSPPSGSE ISEAEDAGSIGKNPPAPVPKAAHVRTTRKGGSSDHLAISIDSESATLINKEDIDEDKGHAFKSLNTSGFIPRQGKSFADRVDGIWVSGGRNLMSRPRARL GLIAYWLLLHMWLLATIL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006252 [exp]	0	1
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	3.6	0.8381
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10009122 [exp]	4.6	0.8009
AT3G06440			Galactosyltransferase family p...		Lus10032650 [exp]	5.3	0.8328
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10035615 [exp]	6.6	0.7595
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10007427 [exp]	6.9	0.8283
AT5G19690		STT3A	staurosporin and temperature s...		Lus10043241 [exp]	7.1	0.7548
AT1G73430			sec34-like family protein (.1....		Lus10015940 [exp]	7.2	0.8180
AT2G39805			Integral membrane Yip1 family ...		Lus10030159 [exp]	10.2	0.7717
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Lus10001661 [exp]	12.2	0.7948
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	17.7	0.7997

Compare expression of checked genes

Lus10006252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.