Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24440 335 / 4e-117 RING/U-box superfamily protein (.1) AT1G13195 335 / 6e-117 RING/U-box superfamily protein (.1.2) AT5G01520 216 / 3e-70 AtAIRP2, AIRP2 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) AT3G47160 213 / 4e-69 RING/U-box superfamily protein (.1.2) AT5G58787 199 / 1e-63 RING/U-box superfamily protein (.1.2) AT2G20030 46 / 1e-05 RING/U-box superfamily protein (.1) AT5G05280 44 / 3e-05 RING/U-box superfamily protein (.1) AT3G48030 44 / 4e-05 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G05130 44 / 7e-05 DNA/RNA helicase protein (.1) AT1G23980 42 / 0.0003 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036937 [exp] 518 / 0 AT1G24440 332 / 5e-116 RING/U-box superfamily protein (.1) Lus10006448 [exp] 368 / 4e-130 AT1G24440 318 / 1e-110 RING/U-box superfamily protein (.1) Lus10011391 [exp] 367 / 2e-129 AT1G24440 319 / 4e-111 RING/U-box superfamily protein (.1) Lus10011390 [exp] 233 / 5e-77 AT3G47160 233 / 3e-77 RING/U-box superfamily protein (.1.2) Lus10006447 [exp] 233 / 9e-77 AT3G47160 233 / 5e-77 RING/U-box superfamily protein (.1.2) Lus10036934 [exp] 230 / 2e-75 AT3G47160 239 / 2e-79 RING/U-box superfamily protein (.1.2) Lus10037053 [exp] 226 / 6e-74 AT3G47160 234 / 1e-77 RING/U-box superfamily protein (.1.2) Lus10004821 [exp] 219 / 3e-71 AT5G01520 387 / 5e-138 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Lus10002491 [exp] 218 / 9e-71 AT5G01520 386 / 1e-137 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G181300 [exp] 402 / 1e-143 AT1G24440 352 / 1e-123 RING/U-box superfamily protein (.1) Potri.010G052700 [exp] 397 / 2e-141 AT1G24440 349 / 1e-122 RING/U-box superfamily protein (.1) Potri.012G093300 [exp] 350 / 6e-123 AT1G24440 312 / 4e-108 RING/U-box superfamily protein (.1) Potri.015G089800 [exp] 335 / 4e-117 AT1G24440 295 / 3e-101 RING/U-box superfamily protein (.1) Potri.010G053000 [exp] 240 / 2e-79 AT1G13195 235 / 1e-77 RING/U-box superfamily protein (.1.2) Potri.016G115300 [exp] 231 / 3e-76 AT5G01520 339 / 6e-119 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.004G041200 [exp] 231 / 6e-76 AT3G47160 313 / 1e-108 RING/U-box superfamily protein (.1.2) Potri.011G050700 [exp] 230 / 1e-75 AT3G47160 311 / 5e-108 RING/U-box superfamily protein (.1.2) Potri.006G099600 [exp] 222 / 1e-72 AT5G01520 324 / 4e-113 ABA Insensitive RING Protein 2, RING/U-box superfamily protein (.1.2) Potri.009G045400 [exp] 220 / 9e-72 AT3G47160 381 / 1e-135 RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006253 pacid=23139697 polypeptide=Lus10006253 locus=Lus10006253.g ID=Lus10006253.BGIv1.0 annot-version=v1.0 ATGGAGATGGAGATGATGTATTTGGAGTTGGGGAGGTTTTCTTCTTACCAGGACTCCCTCAAAGTTCTTGAAGCTGATATTCAGCATGCTAATGCTTTGG CTGCTGAAATCCCTAGAGGGAAAGGTGGTTCATATCTTCAAATGAAGCTAGTCTACAACCAATGGGCTCCCTTTTTCTTGTTCTTGCTTCAGAGGATAGA TTCCTCATGTGTCTGTTTACTCCCTAGATATCTCAATCTCTTCCACGTCCTTGTTTACAAGGTTCAAGACAGCCTACCGCGGATTTCTGCTCATGGAAGG AAAGCAACCGTCAAGGAGTTCTATGGTGTCATCTTACCTTCCCTTCAAAGGATTCACAGCAACTTGGATGAATTCGACATGGTGGTAGATGTTAAGCAAG GGGTTCGAGCAATTGAGAGCTCCAAAGTAAAGAAGATGGACGGAGATCATAAGCTTATCAGCATCGATCTGGAGAGGGAAGATGAATGTGGCATCTGCTT GGAGCCTTGCACCAAGATGGTTTTGCCTAATTGTTGTCATGCAATGTGCATCAAGTGCTACCGCAATTGGAACACGAGGTCGGAGTCGTGTCCATTTTGT CGCGGAAGCTTGAAGAGAGTCAACTCAGAAGACCTATGGGTGCTCACTTGCAACAATGATGTGGTTGATACTATGCAGGTTACGCGGGAAGACCTCTTGC GATTCTATCTTTACATCGATCGTCTGCCAAAAGACTACCCGGACGCTCTCTTCTTAGTGTACTATGAGTATCTTTTCTGA
AA sequence Show only first row Show all	>Lus10006253 pacid=23139697 polypeptide=Lus10006253 locus=Lus10006253.g ID=Lus10006253.BGIv1.0 annot-version=v1.0 MEMEMMYLELGRFSSYQDSLKVLEADIQHANALAAEIPRGKGGSYLQMKLVYNQWAPFFLFLLQRIDSSCVCLLPRYLNLFHVLVYKVQDSLPRISAHGR KATVKEFYGVILPSLQRIHSNLDEFDMVVDVKQGVRAIESSKVKKMDGDHKLISIDLEREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTRSESCPFC RGSLKRVNSEDLWVLTCNNDVVDTMQVTREDLLRFYLYIDRLPKDYPDALFLVYYEYLF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	0	1
AT3G10250			Plant protein 1589 of unknown ...		Lus10031001 [exp]	2.0	0.9710
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Lus10035873 [exp]	2.2	0.9779
AT2G23450			Protein kinase superfamily pro...		Lus10011652 [exp]	5.7	0.9720
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10042516 [exp]	5.7	0.9728
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022190 [exp]	6.9	0.9666
AT4G32440			Plant Tudor-like RNA-binding p...		Lus10024835 [exp]	7.7	0.9661
AT2G23450			Protein kinase superfamily pro...		Lus10032741 [exp]	7.7	0.9685
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	8.4	0.9702
AT5G65495			unknown protein		Lus10012729 [exp]	8.6	0.9548
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Lus10020436 [exp]	8.8	0.9587

Compare expression of checked genes

Lus10006253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.