Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022968 [exp] 334 / 8e-111 AT1G10790 214 / 8e-63 unknown protein Lus10005851 [exp] 261 / 5e-90 ND / Lus10014865 [exp] 231 / 6e-78 ND / Lus10017044 [exp] 189 / 3e-60 ND / Lus10003428 [exp] 188 / 5e-60 ND / Lus10005604 [exp] 181 / 1e-57 ND / Lus10032803 [exp] 180 / 4e-57 ND / Lus10008258 [exp] 179 / 1e-56 ND / Lus10040033 [exp] 171 / 7e-56 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006254 pacid=23149672 polypeptide=Lus10006254 locus=Lus10006254.g ID=Lus10006254.BGIv1.0 annot-version=v1.0 ATGGTTCAGACCATTTGTGATAGAGGTGGCCCCGCTGTACGGGTCTTGACTTCACTGGTGCGGTCCCAGTATCAATTAGAATCTGAAGGAGTGAAAGAGC CGAAGAAGTCGGACGCGCCTAAAGGCAGGCCCTATGCGCGAAAGACCGATGGGCGGCACCCTTCGTACCACGAGCATGCGAGTGCTCATTGCACCCCATC TAAGGGCAAGACCAAATCAGGTACCGGAACTGCGCAACCGGCTAAGCCAACCACAAGCAAGTCTAAAACTTCTATTCCTAACAGAGTGCTTCCATACATG TCGTATATCCATGCCGGGCTCTGGCCGTTGGCAACTTCGGTATTCGACGTTATTGGTGACGACCACTGCGGGTTTAGATGTGAATCCCACTCTTTTACCG GCGGTGACCAACATCAATACGTTGCCATGCGTCAGGAGCTTATGGATCACGTCCATATGTACTGGGGACGGTGGTATCATAAGGTGTATGAGGGCGAGCT GGACACTGTCCTAACCAGACTGGGGTGGCTATGA
AA sequence Show only first row Show all	>Lus10006254 pacid=23149672 polypeptide=Lus10006254 locus=Lus10006254.g ID=Lus10006254.BGIv1.0 annot-version=v1.0 MVQTICDRGGPAVRVLTSLVRSQYQLESEGVKEPKKSDAPKGRPYARKTDGRHPSYHEHASAHCTPSKGKTKSGTGTAQPAKPTTSKSKTSIPNRVLPYM SYIHAGLWPLATSVFDVIGDDHCGFRCESHSFTGGDQHQYVAMRQELMDHVHMYWGRWYHKVYEGELDTVLTRLGWL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10006254 [exp]	0	1
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031577 [exp]	3.9	0.9244
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	4.4	0.9405
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	6.2	0.9405
AT2G29940		ABCG31, PDR3, A...	ATP-binding cassette G31, plei...		Lus10018230 [exp]	6.9	0.9181
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	7.5	0.9405
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	8.7	0.9405
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	9.7	0.9405
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	10.7	0.9405
					Lus10003629 [exp]	10.7	0.8772
AT1G01450			Protein kinase superfamily pro...		Lus10041113 [exp]	11.5	0.9405

Compare expression of checked genes

Lus10006254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.