Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67170 350 / 1e-118 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) AT3G22260 76 / 2e-15 Cysteine proteinases superfamily protein (.1.2.3) AT3G02070 67 / 1e-12 Cysteine proteinases superfamily protein (.1) AT5G04250 67 / 3e-12 Cysteine proteinases superfamily protein (.1.2) AT2G27350 62 / 3e-10 OTLD1 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) AT5G03330 58 / 4e-09 Cysteine proteinases superfamily protein (.1.2) AT3G62940 53 / 2e-07 Cysteine proteinases superfamily protein (.1.2.3) AT3G04950 41 / 0.001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023019 [exp] 74 / 2e-14 AT5G03330 325 / 4e-110 Cysteine proteinases superfamily protein (.1.2) Lus10001404 [exp] 74 / 2e-14 AT5G03330 327 / 9e-111 Cysteine proteinases superfamily protein (.1.2) Lus10013813 [exp] 71 / 3e-13 AT5G03330 280 / 2e-92 Cysteine proteinases superfamily protein (.1.2) Lus10005193 [exp] 69 / 3e-12 AT2G27350 549 / 0.0 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Lus10037977 [exp] 66 / 2e-11 AT5G04250 361 / 5e-124 Cysteine proteinases superfamily protein (.1.2) Lus10010459 [exp] 63 / 4e-11 AT3G22260 338 / 7e-119 Cysteine proteinases superfamily protein (.1.2.3) Lus10026525 [exp] 63 / 9e-11 AT5G03330 292 / 4e-97 Cysteine proteinases superfamily protein (.1.2) Lus10005939 [exp] 63 / 1e-10 AT3G62940 363 / 9e-126 Cysteine proteinases superfamily protein (.1.2.3) Lus10038708 [exp] 63 / 1e-10 AT5G04250 367 / 2e-126 Cysteine proteinases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G140500 [exp] 434 / 2e-151 AT5G67170 401 / 3e-139 SEC-C motif-containing protein / OTU-like cysteine protease family protein (.1.2) Potri.016G019700 [exp] 71 / 8e-14 AT3G22260 333 / 5e-117 Cysteine proteinases superfamily protein (.1.2.3) Potri.014G140200 [exp] 66 / 2e-12 AT3G02070 358 / 2e-127 Cysteine proteinases superfamily protein (.1) Potri.009G160100 [exp] 67 / 6e-12 AT2G27350 440 / 3e-150 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.004G196800 [exp] 67 / 6e-12 AT2G27350 458 / 3e-157 otubain-like deubiquitinase 1, OTU-like cysteine protease family protein (.1.2.3.4.5.6) Potri.006G021700 [exp] 64 / 1e-11 AT3G22260 347 / 2e-122 Cysteine proteinases superfamily protein (.1.2.3) Potri.010G225400 [exp] 65 / 2e-11 AT5G04250 360 / 2e-123 Cysteine proteinases superfamily protein (.1.2) Potri.016G094700 [exp] 64 / 5e-11 AT5G03330 316 / 9e-107 Cysteine proteinases superfamily protein (.1.2) Potri.006G125900 [exp] 63 / 1e-10 AT5G03330 329 / 1e-111 Cysteine proteinases superfamily protein (.1.2) Potri.008G036900 [exp] 59 / 4e-10 AT5G04250 239 / 4e-79 Cysteine proteinases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02810 [flax] [poplar] SEC-C SEC-C motif CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10006255 pacid=23149677 polypeptide=Lus10006255 locus=Lus10006255.g ID=Lus10006255.BGIv1.0 annot-version=v1.0 ATGGTGAAGACTAGACACCAGAAGTCCAAGCCCCATAAGGCTCCCAAGGTGAAGCAACATGGTAAACAAGCTGATCTCACTCTGTTTCTTGGTCAGTTAG ATGTATTGGGCCTAAGGATTATTCCAGTGACAGCTGATGGTAACTGTTTTTTCAGGTATGTTAGGCTCGTTCACGTGTTTAGGAGCCTGGCTGATCAGTT AGCTGGTAACGAAGAAGAGCATGAGAATTATCGTAGTACAGTGGTCCAGTATATAAGGAAAAATCGTGAAATGTTTGAGCCCTTTCTCGAGGATGATGTC CCATTTGATGAATATTGCCAGCAAATGGAGAAGGATGGGGCATGGGCTGGCCACATGGAGTTGCAGGCAGCTTCCCTTGTTACAAATTGCAACATATGCA TTCACCGGTACACGTCACCTCGCTGGTATATTCAGAATTTTGATCACCGTGGAGCTCATATGGTTCATTTATCCTATCATGATGAAGAACATTACAATAG TGTACGCTCAAAGGAGGATCCATGTGATGGACCAGCACGGCTGATTGTAATCAAGGCTGATGTTGCTCTTTCTCAAGGGAAAGCTGCTTCAGGCAAGTCC AAAAGCTTAGTATCCGGGGGTGTAACTGATTCAGGATCTATCAAATTAGTAATGACAGGAAGTGGCTGTGAAGATATCAGAAAGGTTGAAGAGGTCTTAC TACAAGTGCATGGTGATGTTGGTGCGGCAATAGAGTACCTAATAGCAGAAAGAGAATCAGATGACTACTCGGTTAACAATGGTTCCCTTTCATGTCAAGC AGACAGTACTTCTGGTAATGGCTGGTCAGTAATATCTAAGAATCTCTTCAGGAATACTCCAACGGGAGATGGAGATGGGAACTGTATCCAGAGCTGGGAA GAGCTTTCAAAGAAGACCGGCAACCATGAGCCATCTGGTAGTCCTGTCAAAGAAACCACTAAGGATGGCATCTCAAAAACTGACCCAAAGATACCAAGAA ATAAGGTATGTCCGTGTGGATCTAAAAGGAAATACAAGTCTTGCTGTGGAACTGCAAAGGGGAGATCATCCTCTGCGAAGATAATAAGCAACCAAACGGC TGAGTTTGGAAGTGGAAGGGGTAGAAAGGATAAGAAACAGAGCAAGAAAGGGGGACATCCTGAATCGCTGCCTTCATGCGGATCTGAAAATGGGCAAATG GACATGGGTGCACTTTGTATTTAA
AA sequence Show only first row Show all	>Lus10006255 pacid=23149677 polypeptide=Lus10006255 locus=Lus10006255.g ID=Lus10006255.BGIv1.0 annot-version=v1.0 MVKTRHQKSKPHKAPKVKQHGKQADLTLFLGQLDVLGLRIIPVTADGNCFFRYVRLVHVFRSLADQLAGNEEEHENYRSTVVQYIRKNREMFEPFLEDDV PFDEYCQQMEKDGAWAGHMELQAASLVTNCNICIHRYTSPRWYIQNFDHRGAHMVHLSYHDEEHYNSVRSKEDPCDGPARLIVIKADVALSQGKAASGKS KSLVSGGVTDSGSIKLVMTGSGCEDIRKVEEVLLQVHGDVGAAIEYLIAERESDDYSVNNGSLSCQADSTSGNGWSVISKNLFRNTPTGDGDGNCIQSWE ELSKKTGNHEPSGSPVKETTKDGISKTDPKIPRNKVCPCGSKRKYKSCCGTAKGRSSSAKIISNQTAEFGSGRGRKDKKQSKKGGHPESLPSCGSENGQM DMGALCI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	0	1
AT2G32760			unknown protein		Lus10037826 [exp]	1.4	0.9160
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10020162 [exp]	2.0	0.9243
AT2G31130			unknown protein		Lus10000990 [exp]	2.2	0.9001
					Lus10041093 [exp]	2.8	0.9043
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	5.0	0.8694
					Lus10019353 [exp]	5.9	0.8970
AT1G28330		DYL1, DRM1	DORMANCY-ASSOCIATED PROTEIN 1,...		Lus10013996 [exp]	6.0	0.8930
AT2G24960			unknown protein		Lus10026250 [exp]	7.2	0.8830
AT3G46590		ATTRP2, TRFL1	TRF-like 1 (.1.2.3)		Lus10016527 [exp]	7.5	0.9109
AT4G03115			Mitochondrial substrate carrie...		Lus10009777 [exp]	8.2	0.8778

Compare expression of checked genes

Lus10006255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.