Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G50220 361 / 5e-125 IRX15 IRREGULAR XYLEM 15, Protein of unknown function (DUF579) (.1) AT5G67210 357 / 2e-123 IRX15-L IRX15-LIKE, Protein of unknown function (DUF579) (.1) AT2G15440 211 / 4e-66 Protein of unknown function (DUF579) (.1) AT1G71690 143 / 4e-40 Protein of unknown function (DUF579) (.1) AT1G09610 138 / 2e-38 Protein of unknown function (DUF579) (.1) AT1G33800 137 / 5e-38 Protein of unknown function (DUF579) (.1) AT1G27930 124 / 3e-33 Protein of unknown function (DUF579) (.1) AT4G09990 124 / 3e-33 Protein of unknown function (DUF579) (.1) AT1G67330 120 / 1e-31 Protein of unknown function (DUF579) (.1) AT4G24910 102 / 8e-25 Protein of unknown function (DUF579) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041596 [exp] 498 / 2e-178 AT5G67210 465 / 8e-166 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10009378 [exp] 298 / 1e-99 AT5G67210 336 / 5e-115 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10019326 [exp] 270 / 2e-88 AT5G67210 335 / 2e-114 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10027879 [exp] 228 / 4e-73 AT5G67210 299 / 2e-101 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10002829 [exp] 228 / 9e-73 AT5G67210 296 / 5e-100 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Lus10037026 [exp] 140 / 4e-39 AT1G67330 382 / 1e-134 Protein of unknown function (DUF579) (.1) Lus10015780 [exp] 139 / 6e-39 AT1G67330 381 / 4e-134 Protein of unknown function (DUF579) (.1) Lus10005822 [exp] 130 / 4e-35 AT4G09990 360 / 6e-126 Protein of unknown function (DUF579) (.1) Lus10012537 [exp] 128 / 2e-34 AT1G27930 313 / 2e-107 Protein of unknown function (DUF579) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G141300 [exp] 375 / 8e-131 AT5G67210 405 / 1e-142 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.007G047000 [exp] 374 / 4e-130 AT5G67210 399 / 2e-140 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.001G302600 [exp] 265 / 3e-87 AT5G67210 305 / 2e-103 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.009G098800 [exp] 260 / 3e-85 AT5G67210 293 / 2e-98 IRX15-LIKE, Protein of unknown function (DUF579) (.1) Potri.004G226800 [exp] 140 / 2e-39 AT1G09610 424 / 4e-151 Protein of unknown function (DUF579) (.1) Potri.003G172300 [exp] 140 / 3e-39 AT1G67330 369 / 1e-129 Protein of unknown function (DUF579) (.1) Potri.003G003801 [exp] 140 / 5e-39 AT1G09610 429 / 5e-153 Protein of unknown function (DUF579) (.1) Potri.013G102200 [exp] 139 / 2e-38 AT1G33800 362 / 3e-126 Protein of unknown function (DUF579) (.1) Potri.019G076300 [exp] 136 / 2e-37 AT1G09610 367 / 2e-128 Protein of unknown function (DUF579) (.1) Potri.001G056300 [exp] 135 / 2e-37 AT1G67330 366 / 4e-128 Protein of unknown function (DUF579) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04669 [flax] [poplar] Polysacc_synt_4 Polysaccharide biosynthesis
Representative CDS sequence Show only first row Show all	>Lus10006258 pacid=23149670 polypeptide=Lus10006258 locus=Lus10006258.g ID=Lus10006258.BGIv1.0 annot-version=v1.0 ATGAAGAACAACATCAACAACAACAATGGGAATGGCAACACAAAGCTCATCCTTCTCCATCCTTACAATATTCAAAAGCAAGGCGCCACCACTTCTTATT CCAACCGCCTTTGGGTTCTCGCCTTTCTCTCCTTCTTCACACTCGCCTTCCTCCTCACCCTTGTCTACCCCCGCGACTCTTTCACTACCAAGTCTTCCTC CCTCAACGCCGCCGCCGTTTCGTCTACTGTAATCCTCTCATCATCTTCATCATCAGCCGCCGCGGCAGCAACCACTCCTACTCCACCTGCGCCTCTCCCG ACCACAGTCATCAACACCCTCCTCCATTATGCCGCCCGTTCAAACGACACCTTCCACATGTCCCACTCCGAGATGAAGCCCATCTCCGACGTCCTCCGGA AATGCTCTTCCTCCCCTTGCACCCTCCTCGTCTTCGGCCTCACCCATGAGACCCTCCTCTGGAAGTCCCTCAACCTCAACGGCCGCACCCTCTTCGTTGA GGAGAACCGCTACTATGCAGCCTACTTCGAGGAGATCCACCCGGACATCGACGTTTTCGACGTCCAGTACACCACCAAGGTCTCCGACATGAAGGATCTC CTCGCCTCCGCAAAGGAACTCGCTGGACAGGAGTGCCGCCCTGTCCAGAACTTGCTCTTCTCCGAATGCAAGCTCGGGATCAACGACCTTCCAAACCACG TCTACGACGTCGATTGGGACGTCATCCTCATCGATGGGCCACGGGGAGATGGCCGTGATGGCCCTGGAAGGATGATGCCAATATTCACGGCGGGAGTTCT GGCCAGGAGTAAGAAGGGCGGCGGCGGGAAAACGCACGTGTTTGTTCACGATTATTATAGGGAGGTGGAGAGGGTTTATGGGGACGAGTTTTTGTGTAGG GAGAATTTGGTGGAGTCAACTAATGGCATGTTGGCTCATTTCGTCGTTGAGAGGATGGACGAAAACTCCACCACCTTCTGCCGGAACCGTAATGGCACGA CGCCGGCTGCTGCTAAAATGGCTTAA
AA sequence Show only first row Show all	>Lus10006258 pacid=23149670 polypeptide=Lus10006258 locus=Lus10006258.g ID=Lus10006258.BGIv1.0 annot-version=v1.0 MKNNINNNNGNGNTKLILLHPYNIQKQGATTSYSNRLWVLAFLSFFTLAFLLTLVYPRDSFTTKSSSLNAAAVSSTVILSSSSSSAAAAATTPTPPAPLP TTVINTLLHYAARSNDTFHMSHSEMKPISDVLRKCSSSPCTLLVFGLTHETLLWKSLNLNGRTLFVEENRYYAAYFEEIHPDIDVFDVQYTTKVSDMKDL LASAKELAGQECRPVQNLLFSECKLGINDLPNHVYDVDWDVILIDGPRGDGRDGPGRMMPIFTAGVLARSKKGGGGKTHVFVHDYYREVERVYGDEFLCR ENLVESTNGMLAHFVVERMDENSTTFCRNRNGTTPAAAKMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	0	1
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10041596 [exp]	1.0	0.9902
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Lus10031142 [exp]	2.4	0.9839
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10035517 [exp]	2.8	0.9879
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10043326 [exp]	3.0	0.9876
AT4G34050		CCoAOMT1	caffeoyl coenzyme A O-methyltr...		Lus10002837 [exp]	4.0	0.9864
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10015576 [exp]	4.5	0.9844
AT1G08250		AtADT6, ADT6	Arabidopsis thaliana arogenate...		Lus10020549 [exp]	4.7	0.9792
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10018801 [exp]	5.6	0.9684
AT2G03200			Eukaryotic aspartyl protease f...		Lus10035961 [exp]	6.0	0.9782
AT2G41610			unknown protein		Lus10030172 [exp]	6.0	0.9811

Compare expression of checked genes

Lus10006258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.