Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67220 591 / 0 FMN-linked oxidoreductases superfamily protein (.1) AT3G49640 109 / 1e-26 Aldolase-type TIM barrel family protein (.1.2) AT4G38890 67 / 8e-12 FMN-linked oxidoreductases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041598 [exp] 822 / 0 AT5G67220 593 / 0.0 FMN-linked oxidoreductases superfamily protein (.1) Lus10003486 [exp] 106 / 5e-25 AT3G49640 498 / 2e-178 Aldolase-type TIM barrel family protein (.1.2) Lus10035460 [exp] 66 / 4e-11 AT4G38890 870 / 0.0 FMN-linked oxidoreductases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047300 [exp] 611 / 0 AT5G67220 605 / 0.0 FMN-linked oxidoreductases superfamily protein (.1) Potri.009G125500 [exp] 67 / 2e-11 AT4G38890 886 / 0.0 FMN-linked oxidoreductases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01207 [flax] [poplar] Dus Dihydrouridine synthase (Dus)
Representative CDS sequence Show only first row Show all	>Lus10006260 pacid=23149668 polypeptide=Lus10006260 locus=Lus10006260.g ID=Lus10006260.BGIv1.0 annot-version=v1.0 ATGAGATCCATCTTCTCTCGTCATCCCTACCTCCAACCTCTCATATACCCAGCAACTAGATATCCCATGGCTTCTTCCCTCACCCAGCTTGTCGATCCGC CTCCTCCAACTGCAGATGATATTCTCTGCTCCGTTGAACACCAGCGAGAGAAAGACTTCTCTACTTCTTCAGCAGCAGAGCCTTCTCGCATCTCACCTTC CCCCAATGGCTACCTGAGTGGTGAGTCTCATGCGGAGCGAGCGTGGGTGTATTGGATCAAGCTTGGACGGCCCAAGTCTATCGTCGCTCCGATGGTTGAC AACTCCGAGCTGCCATTTCGGCTGCTCTGCAAAAAGTATGGAGCCGAAGCTGCTTACACGCCCATGCTGCATTCGAGGATTTTCACCGAGAATGAAAAGT ACCGGACCCAAGAGTTCACTACTTGTAAGGAGGATCGGCCGCTATTTGTTCAATTTTGTGCGAATGATCCAGAAACCCTACTTGAAGCTGCAGGGAGAGT GCAGCCTCATTGCGATTATGTTGATATCAATTTCGGTTGTCCTCAGCGGATAGCCAGACGGGGTTACTATGGAGCATTTCTAATGGATAACTTGCCACTT GTAAAGTCTCTGGTTGAGAAGCTATCTCAAAATCACATCCGTGTATCCTGTAAAATTCGGATATTCCCGAAATTGGAAGACACGATTAGTTATGCCAAAA TGTTGGAGGAAGCTGGCTGCTGGGTGTTGGCTGTCCATGGGCGGACAAGAGATGAAAAAGATGGGAAGAAGTTCAGGGCAGACTGGAAAGCAATCAAGAC CATAAGAGAAGCAGTGAGAATCCCAGTCCTTGCTAATGGAAACATCCGTCACATCGAAGACGTTCATGATTGTTTGAAAGAAACAGGCGTGGAGGGAGTG CTTTCAGCAGAGACTCTGCTCGAGAATCCAGCAGTCTTTGCTGGATACCGTACACCTGAATGGGTCGAAGGTGACAAGGAAAGCCATCGAGATGGATTAC TTGACCAGGCAGATTTGGTGGTGGAGTATTTGAAGCTCTGTGAGGAGTACCCTGTGCCGTGGAGAATGATTCGATCCCATGTCCATAAGATGTTAGGTGA GTGGTTCAGGATTCATCCTCATGTACGAGAGGACCTCAATGCTCAATCCAGGCTCACCTTTGAATTTATGTATGATATGGTGGACCGTCTGAAGAAGCTG GGTGGGAGGATTCCCCTTTACGTTAAAGAAGCAGATGCAGCTAGGCCTATAACTTGTGCTGGTGGGTTACCAAGCTGA
AA sequence Show only first row Show all	>Lus10006260 pacid=23149668 polypeptide=Lus10006260 locus=Lus10006260.g ID=Lus10006260.BGIv1.0 annot-version=v1.0 MRSIFSRHPYLQPLIYPATRYPMASSLTQLVDPPPPTADDILCSVEHQREKDFSTSSAAEPSRISPSPNGYLSGESHAERAWVYWIKLGRPKSIVAPMVD NSELPFRLLCKKYGAEAAYTPMLHSRIFTENEKYRTQEFTTCKEDRPLFVQFCANDPETLLEAAGRVQPHCDYVDINFGCPQRIARRGYYGAFLMDNLPL VKSLVEKLSQNHIRVSCKIRIFPKLEDTISYAKMLEEAGCWVLAVHGRTRDEKDGKKFRADWKAIKTIREAVRIPVLANGNIRHIEDVHDCLKETGVEGV LSAETLLENPAVFAGYRTPEWVEGDKESHRDGLLDQADLVVEYLKLCEEYPVPWRMIRSHVHKMLGEWFRIHPHVREDLNAQSRLTFEFMYDMVDRLKKL GGRIPLYVKEADAARPITCAGGLPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67220			FMN-linked oxidoreductases sup...		Lus10006260 [exp]	0	1
AT3G10110		MEE67	maternal effect embryo arrest ...		Lus10020223 [exp]	1.0	0.9126
AT1G31830			Amino acid permease family pro...		Lus10007593 [exp]	4.2	0.8418
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	4.5	0.8427
AT5G56440			F-box/RNI-like/FBD-like domain...		Lus10023425 [exp]	5.9	0.8047
AT5G27930			Protein phosphatase 2C family ...		Lus10029874 [exp]	8.0	0.8046
AT5G27990			Pre-rRNA-processing protein TS...		Lus10005806 [exp]	8.8	0.7985
AT1G13380			Protein of unknown function (D...		Lus10041447 [exp]	8.9	0.7802
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10021410 [exp]	8.9	0.8146
AT1G63250			DEA(D/H)-box RNA helicase fami...		Lus10034440 [exp]	10.3	0.7369
AT5G49120			Protein of unknown function (D...		Lus10006499 [exp]	14.1	0.8000

Compare expression of checked genes

Lus10006260 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.