Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23320 208 / 6e-65 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT4G31550 205 / 1e-63 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT4G24240 151 / 1e-42 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT2G30590 149 / 1e-41 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT3G04670 143 / 1e-39 WRKY ATWRKY39, WRKY39 WRKY DNA-binding protein 39 (.1.2) AT2G24570 142 / 2e-39 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT5G28650 141 / 4e-39 WRKY ATWRKY74, WRKY74 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) AT1G29280 110 / 4e-28 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT3G58710 103 / 2e-25 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT2G34830 105 / 3e-25 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041600 [exp] 553 / 0 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10010053 [exp] 236 / 3e-75 AT4G24240 303 / 1e-101 WRKY DNA-binding protein 7 (.1) Lus10021999 [exp] 148 / 8e-42 AT5G28650 297 / 4e-100 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10042538 [exp] 147 / 1e-41 AT5G28650 301 / 7e-102 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10024864 [exp] 148 / 2e-41 AT2G30590 325 / 7e-110 WRKY DNA-binding protein 21 (.1) Lus10018776 [exp] 147 / 3e-41 AT2G30590 322 / 6e-109 WRKY DNA-binding protein 21 (.1) Lus10033857 [exp] 145 / 2e-40 AT3G04670 362 / 3e-124 WRKY DNA-binding protein 39 (.1.2) Lus10014745 [exp] 145 / 3e-40 AT3G04670 362 / 2e-124 WRKY DNA-binding protein 39 (.1.2) Lus10026936 [exp] 144 / 5e-40 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G047400 [exp] 332 / 3e-113 AT4G24240 283 / 4e-94 WRKY DNA-binding protein 7 (.1) Potri.005G141400 [exp] 308 / 1e-103 AT4G24240 236 / 2e-75 WRKY DNA-binding protein 7 (.1) Potri.002G123300 [exp] 231 / 1e-73 AT4G24240 275 / 2e-90 WRKY DNA-binding protein 7 (.1) Potri.014G024200 [exp] 226 / 3e-71 AT4G24240 261 / 8e-85 WRKY DNA-binding protein 7 (.1) Potri.018G008500 [exp] 155 / 2e-44 AT4G31550 315 / 1e-106 WRKY DNA-binding protein 11 (.1.2) Potri.002G043500 [exp] 149 / 5e-42 AT2G30590 345 / 1e-117 WRKY DNA-binding protein 21 (.1) Potri.005G219500 [exp] 149 / 6e-42 AT2G30590 352 / 3e-120 WRKY DNA-binding protein 21 (.1) Potri.018G139300 [exp] 146 / 2e-41 AT4G31550 284 / 5e-95 WRKY DNA-binding protein 11 (.1.2) Potri.003G111900 [exp] 144 / 2e-40 AT2G30590 154 / 5e-44 WRKY DNA-binding protein 21 (.1) Potri.013G042600 [exp] 145 / 3e-40 AT3G04670 333 / 1e-113 WRKY DNA-binding protein 39 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10533 [flax] [poplar] Plant_zn_clust Plant zinc cluster domain CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10006261 pacid=23149671 polypeptide=Lus10006261 locus=Lus10006261.g ID=Lus10006261.BGIv1.0 annot-version=v1.0 ATGGCCGTAGAGCTCATGATAAACTACGGTGGCAACACAAACTTCGTCAGCCAAATGGAAGAGGCAGCCGTTCAAGAAGCCGCCTCCGGCCTTGAAAGCG TCAACAAGCTAATCAGACTCCTCTCCCAACACCAGACAACCCAAGATCAGCACAAGATATCCAACTCCTCTCCCTCCGGCGCCTCCGCTGCCGTCAATAT TGAAACCGATTGCAGAGCCGTGGCGGACGCTGCCGTATCCAAGTTCAGAAAGGTAATTTCCCTCCTCGGCCGCACCAGAACCGGCCATGCCCGCTTCCGC AGAGCCCCCGTCGTCTCCGCCGCCGGGGCTGCAAATCTGAGCCAACAGAGTCAGAACGAAGTGGCTCCACATCAGATTCCAGAGAGCAAGGTATACTACG CTACGCCTATTCAGCAGATTCCACCGGCGCCGCAGGATTTCGGACTTGCGGTGGTACCCAGAGAGAGGAAAGATTTGTCGACCGCCACAATAAACTTCTC GTCTTATTCGTCAGCCGGAAACACGTCGTTTGTGTCGACGTTGACCGGAGAAACGGAGAGCAGGCAGCAGCAGTCATCGTCATCGGCGGCGTTTCAGATT ACGAATATGTCTCAGGCAGCGTCGTCAGCGAGTGGGAAGAGGCCACCACTGTCGTTGTCTTCGTCGATGAAGAGGAAGTGTAGCTCGGAGACTATGGGAT CCGGGAAATGCGCCAGTGGTGGCTCGTCGGGTCGCTGCCATTGCTCGAAGAAGAGCAGAAAGATGAGAATGAAGAAGGTGGTTAGGGTTCCAGCAATAAG CATGAAGATGGCAGACATTCCTCCAGACGATTACTCATGGCGCAAGTATGGTCAGAAGCCAATTAAAGGGTCCCCTTATCCACGGGGTTATTACAAGTGC AGCAGCGTAAGGGGATGCCCAGCGAGGAAGCATGTGGAAAGAGCAGTGGATGATCCTGCGATGCTGGTGGTAACCTACGAAGGAGATCACAATCATAACA CGTTGTCTGTTGTTGAGACAACTAATCTCATCTTAGAATCCTCCTAA
AA sequence Show only first row Show all	>Lus10006261 pacid=23149671 polypeptide=Lus10006261 locus=Lus10006261.g ID=Lus10006261.BGIv1.0 annot-version=v1.0 MAVELMINYGGNTNFVSQMEEAAVQEAASGLESVNKLIRLLSQHQTTQDQHKISNSSPSGASAAVNIETDCRAVADAAVSKFRKVISLLGRTRTGHARFR RAPVVSAAGAANLSQQSQNEVAPHQIPESKVYYATPIQQIPPAPQDFGLAVVPRERKDLSTATINFSSYSSAGNTSFVSTLTGETESRQQQSSSSAAFQI TNMSQAASSASGKRPPLSLSSSMKRKCSSETMGSGKCASGGSSGRCHCSKKSRKMRMKKVVRVPAISMKMADIPPDDYSWRKYGQKPIKGSPYPRGYYKC SSVRGCPARKHVERAVDDPAMLVVTYEGDHNHNTLSVVETTNLILESS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23320	WRKY	WRKY15	WRKY DNA-binding protein 15 (....		Lus10006261 [exp]	0	1
					Lus10018551 [exp]	1.4	0.8664
AT1G08315			ARM repeat superfamily protein...		Lus10026170 [exp]	4.5	0.8431
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	8.5	0.8812
AT1G24095			Putative thiol-disulphide oxid...		Lus10030833 [exp]	9.8	0.8279
AT5G16110			unknown protein		Lus10009170 [exp]	10.0	0.8372
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	10.6	0.8520
					Lus10018550 [exp]	11.7	0.8207
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10003772 [exp]	12.6	0.8404
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013494 [exp]	13.7	0.8391
					Lus10039779 [exp]	17.0	0.8041

Compare expression of checked genes

Lus10006261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.