Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33790 624 / 0 G7, FAR3, CER4 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) AT5G22500 530 / 0 FAR1 fatty acid reductase 1 (.1) AT3G44540 507 / 2e-177 FAR4 fatty acid reductase 4 (.1.2) AT3G44550 487 / 2e-169 FAR5 fatty acid reductase 5 (.1) AT3G44560 472 / 2e-163 FAR8 fatty acid reductase 8 (.1) AT3G11980 365 / 6e-120 FAR2, MS2 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) AT5G22420 315 / 2e-103 FAR7 fatty acid reductase 7 (.1) AT3G56700 282 / 4e-89 AtFAR6, FAR6 fatty acid reductase 6 (.1) AT1G53500 43 / 0.0006 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020584 [exp] 973 / 0 AT4G33790 627 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036824 [exp] 431 / 3e-147 AT3G44540 461 / 6e-159 fatty acid reductase 4 (.1.2) Lus10019187 [exp] 410 / 1e-138 AT3G44540 444 / 4e-152 fatty acid reductase 4 (.1.2) Lus10016208 [exp] 379 / 3e-125 AT3G11980 749 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10029336 [exp] 377 / 2e-124 AT3G11980 753 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10015974 [exp] 371 / 1e-122 AT3G11980 735 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10000851 [exp] 297 / 3e-94 AT3G11980 459 / 2e-155 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Lus10036821 [exp] 136 / 2e-37 AT3G44540 143 / 5e-41 fatty acid reductase 4 (.1.2) Lus10000852 [exp] 74 / 6e-14 AT3G11980 181 / 9e-52 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G144900 [exp] 742 / 0 AT4G33790 618 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.004G185000 [exp] 739 / 0 AT4G33790 588 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G145000 [exp] 577 / 0 AT4G33790 578 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.004G185100 [exp] 565 / 0 AT4G33790 594 / 0.0 FATTY ACID REDUCTASE 3, ECERIFERUM 4, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.019G075201 [exp] 533 / 0 AT3G44540 515 / 1e-180 fatty acid reductase 4 (.1.2) Potri.016G062200 [exp] 396 / 2e-132 AT3G11980 754 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.006G196500 [exp] 351 / 6e-115 AT3G11980 699 / 0.0 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.016G031600 [exp] 322 / 7e-105 AT3G11980 503 / 9e-174 MALE STERILITY 2, FATTY ACID REDUCTASE 2, Jojoba acyl CoA reductase-related male sterility protein (.1) Potri.009G145100 [exp] 82 / 5e-19 AT3G44540 79 / 1e-18 fatty acid reductase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07993 [flax] [poplar] NAD_binding_4 Male sterility protein CL0063 [flax] [poplar] PF03015 [flax] [poplar] Sterile Male sterility protein
Representative CDS sequence Show only first row Show all	>Lus10006264 pacid=23181441 polypeptide=Lus10006264 locus=Lus10006264.g ID=Lus10006264.BGIv1.0 annot-version=v1.0 ATGGAGTTTGGGAGTGTGGTGGGGTTCTTGGAGAGCAGGGCTGTTTTGATCACTGGTGCTACTGGTTTCCTTGCCAAGATTTTGGTGGAGAAAGTGTTGA GAGAGCAGCCCAATGTCAAGAGGATGTACCTTCTTCTTAGAGCTTCTGATGCCAAGGCTGCTTCCCATAGATTCCAGAATGAGATCATAGGGAAGGACCT TTTCCGGGTGGTGAAGGAGAAATACGGAGAAAATTTGGGTACCATTTTGTCAGAAAAGATAGTTCTGGTTCCTGGTGATATCTCATTGGATGATGGGTTG GGAGTCAAAGACTCAAATCTTAAAGAACAAATGTATGATGAAGTGGACATTATTGTTAACCTAGCTGCAACTACCAACTTTGATGAAAGGTACGATATTG CGGTGGGTCTCAACACGATGGGAGCCAAGTACATCCTTGACTTTGCCAAAAAATGCCCCAAACTCAAAGCCGTGGTCCATGTCTCCACCGCTTATGTAGC CGGAGAGCGACCTGGGCTAATTCTTGAGACTCCGTACCGTATGGGGGAGACCCTGAACGGAGTCACCGGGTTGAACATCGAAGAAGAGAGGAAAATCATC GACAAAAAACTAAACGAGCTCACCGCCGACGGAGCCTCCCCGGATGTCATCAAAAGGACCATGATCGACTTGGGTCTCACAAGAGCAAAAATGTATGGGT GGCCAAACACTTACGTGTTCACAAAAGCAATGGGAGAAATGTTGGTCGGAGAAATCATGAAGAAAAACAATATGTCGGTTGTGATTCTACGTCCAACTAT CGTCACCAGCACTTTCAAACAACCTTTCCCTGGTTGGGTCGAAGGAATCAGGACAATTGATAGTATGGCTGTTGGTTATGGGAAAGGAAGGCTCACATTC TTCCTTGGAGACACTTCAGGAATTCTTGATGTGATACCGGCTGACATGGTGGTTAACTCGATACTAGTCGCGATGGTGGCCCACTCAAATCACCCGTTGT CCGAACCGATAATCTACCAAGTCGGTTCATCGGTTCGCAACCCGTTGAAGTACGGGGAACTTCAGGAGTATGGGTTCCATTACTTCACCCAGAAGCCTTG GGTTGATAAAGACGGAAACCCGGTTAGAGTTGGCAAGATCAAGGTCCTTGGTAGCATGGAGAGCTTTCGCCGATACATGGCCTTTCGCTACCTTCTCGCC TTGAAGGGCTTGGAGTTTGCAAATGCTGCCTTCTGCCATTTCTTCGACGGGATCTGCAGCGATCTCAACCGTAGGATCAAGTTCGTCATGCGCCTCGCGG AGCTCTATCAGCCATATCTCTTCTTCCGCGGAGTGTTCGACGATATTAACACCCAGAAGCTTAGGATGGCGGCTAGAGACAATGGCATTGAGGAAGAAAA GTTCTATTTTGACCCGGTCGAGGTTGATTGGAAGGATTACTTCACCAGCATTCACATCCCGGGTGTAGTGAAACACGTCTTCAAATAA
AA sequence Show only first row Show all	>Lus10006264 pacid=23181441 polypeptide=Lus10006264 locus=Lus10006264.g ID=Lus10006264.BGIv1.0 annot-version=v1.0 MEFGSVVGFLESRAVLITGATGFLAKILVEKVLREQPNVKRMYLLLRASDAKAASHRFQNEIIGKDLFRVVKEKYGENLGTILSEKIVLVPGDISLDDGL GVKDSNLKEQMYDEVDIIVNLAATTNFDERYDIAVGLNTMGAKYILDFAKKCPKLKAVVHVSTAYVAGERPGLILETPYRMGETLNGVTGLNIEEERKII DKKLNELTADGASPDVIKRTMIDLGLTRAKMYGWPNTYVFTKAMGEMLVGEIMKKNNMSVVILRPTIVTSTFKQPFPGWVEGIRTIDSMAVGYGKGRLTF FLGDTSGILDVIPADMVVNSILVAMVAHSNHPLSEPIIYQVGSSVRNPLKYGELQEYGFHYFTQKPWVDKDGNPVRVGKIKVLGSMESFRRYMAFRYLLA LKGLEFANAAFCHFFDGICSDLNRRIKFVMRLAELYQPYLFFRGVFDDINTQKLRMAARDNGIEEEKFYFDPVEVDWKDYFTSIHIPGVVKHVFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Lus10006264 [exp]	0	1
AT4G33790		G7, FAR3, CER4	FATTY ACID REDUCTASE 3, ECERIF...		Lus10020584 [exp]	1.0	0.9651
AT2G46990	AUX_IAA	IAA20	indole-3-acetic acid inducible...		Lus10010081 [exp]	1.7	0.8100
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10023461 [exp]	2.4	0.8388
AT1G74240			Mitochondrial substrate carrie...		Lus10017849 [exp]	9.7	0.7849
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10008544 [exp]	11.0	0.7713
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10024305 [exp]	11.5	0.7860
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Lus10023832 [exp]	28.8	0.7293
					Lus10012330 [exp]	33.9	0.7723
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	35.8	0.7490
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	39.7	0.7389

Compare expression of checked genes

Lus10006264 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.