Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37890 116 / 2e-30 Mitochondrial substrate carrier family protein (.1) AT3G55640 114 / 1e-29 Mitochondrial substrate carrier family protein (.1) AT3G53940 114 / 3e-29 Mitochondrial substrate carrier family protein (.1) AT4G26180 82 / 5e-18 Mitochondrial substrate carrier family protein (.1) AT3G51870 82 / 7e-18 Mitochondrial substrate carrier family protein (.1) AT4G32400 82 / 8e-18 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT5G01500 79 / 2e-16 TAAC thylakoid ATP/ADP carrier (.1) AT1G14560 76 / 1e-15 Mitochondrial substrate carrier family protein (.1) AT4G01100 72 / 3e-14 ADNT1 adenine nucleotide transporter 1 (.1.2) AT5G51050 71 / 8e-14 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020583 [exp] 365 / 4e-124 AT2G37890 88 / 1e-18 Mitochondrial substrate carrier family protein (.1) Lus10016523 [exp] 132 / 9e-36 AT2G37890 156 / 5e-44 Mitochondrial substrate carrier family protein (.1) Lus10036193 [exp] 128 / 7e-35 AT2G37890 153 / 2e-43 Mitochondrial substrate carrier family protein (.1) Lus10016522 [exp] 132 / 1e-34 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 122 / 1e-32 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 113 / 5e-29 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 108 / 3e-27 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10024344 [exp] 95 / 2e-22 AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 87 / 4e-19 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103300 [exp] 107 / 4e-27 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 105 / 2e-26 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 105 / 3e-26 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 96 / 6e-23 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.016G115400 [exp] 91 / 1e-20 AT5G01500 517 / 0.0 thylakoid ATP/ADP carrier (.1) Potri.006G099800 [exp] 90 / 2e-20 AT5G01500 503 / 1e-178 thylakoid ATP/ADP carrier (.1) Potri.006G226300 [exp] 87 / 2e-19 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 82 / 1e-17 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 82 / 1e-17 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 81 / 2e-17 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10006265 pacid=23181449 polypeptide=Lus10006265 locus=Lus10006265.g ID=Lus10006265.BGIv1.0 annot-version=v1.0 ATGAAGAATCTTAAATGGGCTGGCATAGCTACCCTTGTCAACACCATTCCTCAAATCCTGACCGGGTTTGAAACCGGTTTGAGATTCGTCGAAGAGTGGT TCTCACACAACTCGAAAGATACGTGGAGGGGGAACATGGTCTCCATTCTTCACAGTCTGACTTTTTGTGGAGTCAACTCCTTTGCTTATTTGAATCTCAG GTCCTTTCTTACGGCTTGTGTATCGTCTTCTTGTCCGAAATTGGTAGCGTTTACGAGTGGAGCATTGGCCTCCGTCGCGACGTCTTTGGTTTCGCACCCT TTGGATACTTTGATAACTCACATTACAATTCAAGGAAAAGACCATGATGATGCTACTTGGAAAACTACTCTCGACAAGTTATGCACAAAAGAAGGTGGCT TATCGTCCCAGCTTTATGCCGGAATTTCTGCATCATTGTTGGGTATTGTTCCGTATATGGCAGTAAGCTATATCGCATGTGAAGCTGTCTCATTACTCTG TGGACGTACGAGCCCACCGGCGAATGAATTACCGTCAGAATCTACGAGCTTCATGTTCGATCTTGCACGCACTAGCATCGCCACTCTTACTGCTTCCACT GCGGTGTATCCAATTGAAGTTGTACGACGAAAGATGCAGATGAAGAGGGTTACTTCGAATAATAACAGGAGTGTAAGTTTACTGAAAACTTTCAAAAGAG TGGTTCGGAAAGAAGGCGTCGAGGGATTATATCGTGACATCGACTGGCATTTACTTAAAGTTGTAGCCGGTCATGCATTTGCCTTCACAGCTTTTGAGTT GCTCAAGCGGTGA
AA sequence Show only first row Show all	>Lus10006265 pacid=23181449 polypeptide=Lus10006265 locus=Lus10006265.g ID=Lus10006265.BGIv1.0 annot-version=v1.0 MKNLKWAGIATLVNTIPQILTGFETGLRFVEEWFSHNSKDTWRGNMVSILHSLTFCGVNSFAYLNLRSFLTACVSSSCPKLVAFTSGALASVATSLVSHP LDTLITHITIQGKDHDDATWKTTLDKLCTKEGGLSSQLYAGISASLLGIVPYMAVSYIACEAVSLLCGRTSPPANELPSESTSFMFDLARTSIATLTAST AVYPIEVVRRKMQMKRVTSNNNRSVSLLKTFKRVVRKEGVEGLYRDIDWHLLKVVAGHAFAFTAFELLKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37890			Mitochondrial substrate carrie...		Lus10006265 [exp]	0	1
					Lus10000363 [exp]	2.0	1.0000
					Lus10003285 [exp]	3.5	1.0000
AT3G10340		PAL4	phenylalanine ammonia-lyase 4 ...		Lus10001405 [exp]	3.7	1.0000
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10027745 [exp]	4.9	1.0000
					Lus10025781 [exp]	5.9	1.0000
					Lus10004996 [exp]	6.0	1.0000
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10006726 [exp]	7.0	1.0000
AT2G25737			Sulfite exporter TauE/SafE fam...		Lus10022134 [exp]	8.5	1.0000
AT5G12060			Plant self-incompatibility pro...		Lus10022829 [exp]	10.4	1.0000
					Lus10000977 [exp]	11.0	1.0000

Compare expression of checked genes

Lus10006265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.