Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45490 429 / 4e-153 ATAUR3 ataurora3 (.1) AT4G32830 334 / 7e-116 ATAUR1 ataurora1 (.1) AT2G25880 334 / 7e-116 ATAUR2 ataurora2 (.1.2) AT2G26980 184 / 3e-56 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT1G30270 184 / 9e-55 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G21326 179 / 2e-53 Ca2+regulated serine-threonine protein kinase family protein (.1) AT5G10930 179 / 4e-53 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G25110 179 / 6e-53 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT1G01140 175 / 1e-51 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G01810 171 / 4e-51 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020580 [exp] 499 / 0 AT2G45490 482 / 3e-174 ataurora3 (.1) Lus10005487 [exp] 335 / 5e-116 AT4G32830 545 / 0.0 ataurora1 (.1) Lus10006033 [exp] 335 / 9e-116 AT4G32830 488 / 2e-175 ataurora1 (.1) Lus10042229 [exp] 185 / 2e-55 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10028115 [exp] 184 / 3e-55 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 184 / 4e-55 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10024448 [exp] 179 / 8e-53 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 178 / 1e-52 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10021852 [exp] 173 / 5e-51 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G080500 [exp] 417 / 6e-149 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.006G235000 [exp] 337 / 8e-117 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.018G057700 [exp] 330 / 2e-114 AT4G32830 544 / 0.0 ataurora1 (.1) Potri.002G177900 [exp] 189 / 3e-57 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.014G104200 [exp] 187 / 2e-56 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.006G062800 [exp] 186 / 7e-56 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 186 / 8e-56 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.001G222600 [exp] 180 / 8e-54 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.013G156000 [exp] 179 / 2e-53 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G263500 [exp] 179 / 4e-53 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006266 pacid=23181457 polypeptide=Lus10006266 locus=Lus10006266.g ID=Lus10006266.BGIv1.0 annot-version=v1.0 ATGGTGGCCGAAAAACCAGGAACCAGGCGGCAGTGGTCGTTGGCGGACTTTGAGACGGGAAAGCCACTCGGGAAAGGGAAGTTCGGCAGAGTCTATCTCG CTCGTGAAGTCAAGAGCAAGTACATAGTGGCGCTGAAGGTGATATTCAAGGCACAGATTGAGAAGTACAAGATTCAGAATCAATTGAGGAGAGAAATGGA GATCCAGACCACTCTCAAACACCCCAACGTGTTACGCCTCTACGGCTGGTTCGACGACGAGGAGAGGATCTTCCTCATTCTCGAGTACGCTCATGGCGGT GAGCTTTATGGAGTTATGCAGAAACGAGGCCACTTGACTGAGAAGGAAGCTGCTACGTATATTGCGAGTCTTGCGTATGCATTAGCTTATTGCCATGGGA AGGACGTGATCCACAGAGACATTAAGCCAGAGAATCTGTTGCTGGATCATGAGGGCAGGTTAAAGATTGCAGATTTTGGGTGGTCAGTACAATCGAGAAG CAAGAGACACACCATGTGCGGAACACTGGATTACTTAGCACCAGAACTTGTAGAAAACAAAGCTCACGATTACACAGTGGATAACTGGACATTAGGAGTG CTTTGTTACGAATTCCTCTACGGTAACCCTCCTTTCGAGGCAGAGGGGCAGCGAGATACTTTCAGAAGGATCATGAAGGTTGATCTTAACTTCCCTTCTC ACCCATTCACCTCAGAGGAAGCAAAAGACATTATCAGCAAAGTAAGTTTGTCCCCAAAAAAAACCCCTTTTCGAGCATCTTCCTGTCAAGTTTTGGTTCT TAACGGGAAATTTGTAAATTGA
AA sequence Show only first row Show all	>Lus10006266 pacid=23181457 polypeptide=Lus10006266 locus=Lus10006266.g ID=Lus10006266.BGIv1.0 annot-version=v1.0 MVAEKPGTRRQWSLADFETGKPLGKGKFGRVYLAREVKSKYIVALKVIFKAQIEKYKIQNQLRREMEIQTTLKHPNVLRLYGWFDDEERIFLILEYAHGG ELYGVMQKRGHLTEKEAATYIASLAYALAYCHGKDVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPELVENKAHDYTVDNWTLGV LCYEFLYGNPPFEAEGQRDTFRRIMKVDLNFPSHPFTSEEAKDIISKVSLSPKKTPFRASSCQVLVLNGKFVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10006266 [exp]	0	1
AT4G23860			PHD finger protein-related (.1...		Lus10023084 [exp]	1.4	0.9162
AT3G53730			Histone superfamily protein (....		Lus10005896 [exp]	2.4	0.9178
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	3.2	0.9033
AT5G35520		MIS12, ATMIS12	MIS12 HOMOLOGUE, ARABIDOPSIS M...		Lus10009652 [exp]	4.2	0.9106
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10042100 [exp]	4.2	0.8980
AT3G53730			Histone superfamily protein (....		Lus10005898 [exp]	4.5	0.9088
AT1G61000			unknown protein		Lus10012690 [exp]	4.6	0.8880
AT3G59110			Protein kinase superfamily pro...		Lus10006544 [exp]	4.9	0.8752
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10036019 [exp]	4.9	0.8503
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008854 [exp]	5.1	0.8640

Compare expression of checked genes

Lus10006266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.