Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27680 425 / 6e-148 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G06690 76 / 5e-15 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 53 / 2e-07 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 52 / 5e-07 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 48 / 5e-06 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 48 / 7e-06 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020578 [exp] 538 / 0 AT2G27680 595 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10020579 [exp] 196 / 8e-62 AT2G27680 111 / 2e-30 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10016327 [exp] 67 / 6e-12 AT1G06690 510 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10002744 [exp] 65 / 3e-11 AT1G06690 496 / 9e-177 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 46 / 3e-05 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 45 / 5e-05 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 45 / 6e-05 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G146000 [exp] 442 / 2e-154 AT2G27680 632 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 77 / 3e-15 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G055500 [exp] 76 / 5e-15 AT1G06690 557 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207000 [exp] 75 / 1e-14 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G006900 [exp] 52 / 4e-07 AT5G53580 556 / 0.0 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G167400 [exp] 50 / 2e-06 AT1G04420 612 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 45 / 8e-05 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 43 / 0.0002 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10006267 pacid=23181444 polypeptide=Lus10006267 locus=Lus10006267.g ID=Lus10006267.BGIv1.0 annot-version=v1.0 ATGTCGGCATCGGTACATCAAATTCAGCCTAAACTCGCCGCGTTGAAGTTATCCTCCGGCCAGAATCCGCCGCGATTCCGAGTTGGATCGGTGAGATGCT GCTCCTACGGACCAGCGCCGGCGGAGGTAAAGGAGTCCCGACGAGTGGAGTTGAAGTACGGGAACGATTCGCTGGAGATAAGCCGAGTTCTCAACGGAAT GTGGCAGACTAGCGGAGGATGGGGAAGTATAGACCGAAACGACGCCGTAGAAGCCATGCTCCGTTACTCCGACGCCGGCCTTTCCACCTTCGACATGGCT GACCACTGTGAAGCGAGAAGCTATGGTGTTAGGCCGCCATTGCAATGTGTGTTCAGTAACGAAGAGCGGAGGATTACGGTGAAGAACGGGAAGGATTCAT TGGATATATGCAGGGTTGTGAATGGGATGTGGCAGACTAGTAGTGGTGGTTGGGGGAAGATTAAACTCGACAGTGCTGCTGATGCCATGATCAAACATGT CGATGCAGGATTGAATACGTTCGATATGGCTGATATATATGGTCCTGCTGAGGATTTGTATGGTATTTTTATCAACCGAGTTCGTAGAGAGCGTCCACCG GAGGTGTTGGAGCAGATTCGAGGACTTACAAAGTGGGTGCCTCCACCTGTTAAGATGACGAGCAACTATGTGAGGGAGAACATCAATCTCTCGAGGAAAC GAATGGACGTTCCGTGCTTGGATATGCTTCAATTTCATTGGTGGGATTACTCGAATTCTGGATACATTGATGCCCTTAAACACCTGACAGACTTGAAGGA AGAAGGTAAAATCAAGACCGTTGCATTGACAAACTTCGACACGGAGAGGCTGCAAATAATTCTGGAAAATGGAATTCCAGTTGTGAGCAACCAGGTGCAA CATTCCATTGTTGACATGCGACCTCAGCAGAAGATGGCAGAGCTGTGTCAACTTACTGGAATGGTGGATGCATGGGGAGGATGGGGTCGGTTCCAAGTCC TACTGAAGACTCTCAAGAAAGTAGCCACCAAACATGGCGTCTCGATTCCAACCGTGGCAGTGAAGTACATACTCGATCAGCCAGCAGTAGCAGGGTCAAT GGTAGGAGTTCGGCTTGGGTTATCGGAACATGTGAACGACTCGAACGCGGTGTTCTCGTTGGAACTGGATGAAGAGGACGTGGAGAGCGTACGGGAAGTG AGCAAGAAAGGTAGGGACTTGATGGGTGTGATTGGAGATTGTGGTGATGAATACAGGCGTTGA
AA sequence Show only first row Show all	>Lus10006267 pacid=23181444 polypeptide=Lus10006267 locus=Lus10006267.g ID=Lus10006267.BGIv1.0 annot-version=v1.0 MSASVHQIQPKLAALKLSSGQNPPRFRVGSVRCCSYGPAPAEVKESRRVELKYGNDSLEISRVLNGMWQTSGGWGSIDRNDAVEAMLRYSDAGLSTFDMA DHCEARSYGVRPPLQCVFSNEERRITVKNGKDSLDICRVVNGMWQTSSGGWGKIKLDSAADAMIKHVDAGLNTFDMADIYGPAEDLYGIFINRVRRERPP EVLEQIRGLTKWVPPPVKMTSNYVRENINLSRKRMDVPCLDMLQFHWWDYSNSGYIDALKHLTDLKEEGKIKTVALTNFDTERLQIILENGIPVVSNQVQ HSIVDMRPQQKMAELCQLTGMVDAWGGWGRFQVLLKTLKKVATKHGVSIPTVAVKYILDQPAVAGSMVGVRLGLSEHVNDSNAVFSLELDEEDVESVREV SKKGRDLMGVIGDCGDEYRR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10006267 [exp]	0	1
AT5G23140		NCLPP7, NCLPP2,...	nuclear-encoded CLP protease P...		Lus10000063 [exp]	4.9	0.9051
AT4G17560			Ribosomal protein L19 family p...		Lus10023720 [exp]	7.6	0.9057
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10031981 [exp]	8.2	0.9056
AT5G35630		ATGSL1, GLN2, G...	GLUTAMINE SYNTHETASE LIKE 1, g...		Lus10034016 [exp]	11.7	0.8882
AT4G17560			Ribosomal protein L19 family p...		Lus10014467 [exp]	12.3	0.9046
AT2G36145			unknown protein		Lus10022687 [exp]	13.0	0.9042
AT5G66530			Galactose mutarotase-like supe...		Lus10028310 [exp]	14.0	0.8742
AT3G27850		RPL12-C	ribosomal protein L12-C (.1)		Lus10022261 [exp]	15.5	0.8965
AT2G17972			unknown protein		Lus10026591 [exp]	16.4	0.8555
AT4G25080		CHLM	magnesium-protoporphyrin IX me...		Lus10016730 [exp]	16.6	0.9002

Compare expression of checked genes

Lus10006267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.