Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04190 244 / 4e-84 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020577 [exp] 276 / 3e-96 AT4G04190 280 / 2e-97 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G146100 [exp] 224 / 2e-76 AT4G04190 261 / 4e-90 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10006268 pacid=23181463 polypeptide=Lus10006268 locus=Lus10006268.g ID=Lus10006268.BGIv1.0 annot-version=v1.0 ATGATGGAGGAAACTATCCTAGTTGGAGAGGACTTAATGCTGGGGCCTACATCTCCTGTTATCCCAAAGGAAATCGCCTCTCATGTGCTTGAAGGTGTAG AGTTGTGCGATGGAATCTTAAAGAACCTGTTCTTGTGCTTGCAAGTTAATGACATTGAACCGTTCTGTCAAGATGAGCTTTCTTTGTACAGAGAATGTGC AGAAAAGCGGGATAAGCAACTAAGGCAACGCCTTCAAGACAGCGAACACAAGTTGGGGTTGTCGATGCCTTTGGATGAAGCAAAGGAGCGTGTTGCTCAA CTCGAAGCTGAAGCCACAGCTTATGAGAGGCGGCTAATTCTCGCCAGTGGAGTTGAAGGGATCGAAGGATTTCGCCAAAGATGGAGCTTGCATGGCCGTA TGTCAGACACCAAGTAA
AA sequence Show only first row Show all	>Lus10006268 pacid=23181463 polypeptide=Lus10006268 locus=Lus10006268.g ID=Lus10006268.BGIv1.0 annot-version=v1.0 MMEETILVGEDLMLGPTSPVIPKEIASHVLEGVELCDGILKNLFLCLQVNDIEPFCQDELSLYRECAEKRDKQLRQRLQDSEHKLGLSMPLDEAKERVAQ LEAEATAYERRLILASGVEGIEGFRQRWSLHGRMSDTK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04190			unknown protein		Lus10006268 [exp]	0	1
AT2G40435			unknown protein		Lus10010217 [exp]	7.5	0.7447
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10012553 [exp]	11.5	0.7413
AT4G01040			Glycosyl hydrolase superfamily...		Lus10005946 [exp]	13.9	0.7220
AT1G26880			Ribosomal protein L34e superfa...		Lus10008617 [exp]	25.1	0.7324
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	26.2	0.7128
AT1G04590		EMB2748	unknown protein		Lus10015943 [exp]	28.6	0.7060
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Lus10035500 [exp]	32.0	0.7073
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10014728 [exp]	34.6	0.7113
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10039077 [exp]	42.8	0.6477
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10001240 [exp]	43.1	0.6999

Compare expression of checked genes

Lus10006268 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.