Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27710 85 / 6e-21 60S acidic ribosomal protein family (.1.2.3.4) AT2G27720 82 / 7e-20 60S acidic ribosomal protein family (.1.2.3) AT3G44590 81 / 3e-19 60S acidic ribosomal protein family (.1.2) AT3G28500 78 / 4e-18 60S acidic ribosomal protein family (.1) AT5G40040 74 / 6e-17 60S acidic ribosomal protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020575 [exp] 121 / 8e-35 AT3G44590 100 / 9e-29 60S acidic ribosomal protein family (.1.2) Lus10043377 [exp] 114 / 2e-31 AT2G27710 102 / 8e-29 60S acidic ribosomal protein family (.1.2.3.4) Lus10019533 [exp] 115 / 8e-30 AT3G44620 262 / 6e-87 protein tyrosine phosphatases;protein tyrosine phosphatases (.1.2) Lus10026714 [exp] 100 / 1e-26 AT3G44590 96 / 6e-27 60S acidic ribosomal protein family (.1.2) Lus10019846 [exp] 99 / 2e-26 AT2G27710 92 / 2e-25 60S acidic ribosomal protein family (.1.2.3.4) Lus10014070 [exp] 99 / 5e-26 AT2G27710 92 / 1e-25 60S acidic ribosomal protein family (.1.2.3.4) Lus10026712 [exp] 100 / 2e-25 AT3G44590 97 / 2e-25 60S acidic ribosomal protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G146200 [exp] 104 / 2e-28 AT2G27710 89 / 2e-24 60S acidic ribosomal protein family (.1.2.3.4) Potri.004G185800 [exp] 103 / 4e-28 AT2G27710 89 / 4e-24 60S acidic ribosomal protein family (.1.2.3.4) Potri.010G236400 [exp] 92 / 9e-24 AT2G27710 90 / 1e-24 60S acidic ribosomal protein family (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00428 [flax] [poplar] Ribosomal_60s 60s Acidic ribosomal protein
Representative CDS sequence Show only first row Show all	>Lus10006270 pacid=23181450 polypeptide=Lus10006270 locus=Lus10006270.g ID=Lus10006270.BGIv1.0 annot-version=v1.0 ATGAAGGTTGTCGCCGCTTACCTGCTCGCCGTCTTGGGTGGCAACAACACCCCCACCGCCGAGGATTTGAAGGGAATCCTTGGAACCGTTGGAGCCGATG CTGATGATGACAGGATTGAGCTGCTCTTGTCCCAAGTGAAAGGAAGGGACACCACTGAACTGATTGCAGCTGGTATGGAGAAGTTGGCTTCAGTGCCATC GGGTGGTGGTGGTGTTGCAGTTGCCGCCTCTGCTGGTCCTGCCGCTGCTGGAGGTGCTGCTGCCCCAGCTGCCGAGGCCAAGAAGGAAGAGAAAGTTGAG GAGAAGGAAGAGTCTGATGACCAAGGAGTCTATCTCGGTACCCTGAGATCTGTAGGTTGTAGTTACAGGTTGCTACCTTTGAATGCCATAGTTTTGGATG AAGTGTATCAACTCAGTTCAAGCAGCCGCCACACTTCCGCCCCCCATGCTGCCGGAACAAAGTCTCATGACGTGAGTGTGGAACAACTAGCTAGTTCACA AGATGCAGAACTCCGACACACCATTGCTGAATTTCGTCGATGTCTCAGTTTGGGAGGTGGACGAGTTGTTGCTGCTTGTCATGAGCTCAAAGATGTTTAC CATAATGACAAACCAAGCTGCTTAGAGTCACTTAAGAAGTTGAAGAAAGAGCATAAACTATTCAAGGATGCCCTCGTTGTAATTAAACAGATGGAGATGG CTATCCTCAAGGAGCAAGAACTTGTAGCGCCGAACGATAGACGGATGAACTGA
AA sequence Show only first row Show all	>Lus10006270 pacid=23181450 polypeptide=Lus10006270 locus=Lus10006270.g ID=Lus10006270.BGIv1.0 annot-version=v1.0 MKVVAAYLLAVLGGNNTPTAEDLKGILGTVGADADDDRIELLLSQVKGRDTTELIAAGMEKLASVPSGGGGVAVAASAGPAAAGGAAAPAAEAKKEEKVE EKEESDDQGVYLGTLRSVGCSYRLLPLNAIVLDEVYQLSSSSRHTSAPHAAGTKSHDVSVEQLASSQDAELRHTIAEFRRCLSLGGGRVVAACHELKDVY HNDKPSCLESLKKLKKEHKLFKDALVVIKQMEMAILKEQELVAPNDRRMN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27710			60S acidic ribosomal protein f...		Lus10006270 [exp]	0	1
AT5G27700			Ribosomal protein S21e (.1)		Lus10029895 [exp]	3.6	0.9376
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019904 [exp]	9.4	0.9138
AT4G15770			RNA binding (.1)		Lus10037509 [exp]	9.8	0.9048
AT5G60670			Ribosomal protein L11 family p...		Lus10015085 [exp]	10.9	0.8559
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10000165 [exp]	14.5	0.9013
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10040433 [exp]	16.0	0.9036
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10017570 [exp]	17.3	0.8714
AT4G15000			Ribosomal L27e protein family ...		Lus10003814 [exp]	19.7	0.8965
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10023548 [exp]	20.9	0.8769
AT5G17710		EMB1241	embryo defective 1241, Co-chap...		Lus10003741 [exp]	24.7	0.8533

Compare expression of checked genes

Lus10006270 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.