Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44600 1091 / 0 AtCYP71, CYP71 cyclophilin 71, cyclophilin71 (.1) AT2G36130 176 / 9e-52 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G01940 171 / 6e-50 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT5G13120 153 / 3e-42 Pnsl5, ATCYP20-2 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) AT5G67530 157 / 8e-41 ATPUB49 plant U-box 49 (.1) AT4G33060 152 / 1e-39 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G62030 145 / 2e-39 CYP20-3, ROC4 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) AT2G21130 138 / 8e-38 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G34870 137 / 1e-37 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT3G56070 135 / 6e-37 ROC2 rotamase cyclophilin 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020573 [exp] 1253 / 0 AT3G44600 1115 / 0.0 cyclophilin 71, cyclophilin71 (.1) Lus10021335 [exp] 171 / 7e-50 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10009237 [exp] 171 / 1e-49 AT1G01940 317 / 2e-112 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10017010 [exp] 166 / 7e-48 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10011330 [exp] 156 / 3e-43 AT5G13120 336 / 2e-117 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10003138 [exp] 155 / 2e-42 AT5G13120 333 / 2e-115 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Lus10007794 [exp] 161 / 4e-42 AT5G67530 868 / 0.0 plant U-box 49 (.1) Lus10004731 [exp] 158 / 4e-41 AT5G67530 916 / 0.0 plant U-box 49 (.1) Lus10020992 [exp] 150 / 8e-40 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G146400 [exp] 1137 / 0 AT3G44600 1095 / 0.0 cyclophilin 71, cyclophilin71 (.1) Potri.016G075600 [exp] 175 / 1e-51 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.002G149700 [exp] 174 / 4e-51 AT1G01940 293 / 3e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G071600 [exp] 169 / 1e-49 AT1G01940 293 / 2e-103 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.003G167700 [exp] 163 / 9e-46 AT5G13120 277 / 5e-94 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.001G060200 [exp] 159 / 2e-44 AT5G13120 297 / 7e-102 Photosynthetic NDH subcomplex L 5, ARABIDOPSIS THALIANA CYCLOPHILIN 20-2, cyclophilin 20-2 (.1.2) Potri.005G148900 [exp] 167 / 3e-44 AT5G67530 806 / 0.0 plant U-box 49 (.1) Potri.002G185200 [exp] 159 / 3e-44 AT3G62030 293 / 2e-100 cyclophilin 20-3, rotamase CYP 4 (.1.2.3) Potri.009G106200 [exp] 146 / 1e-38 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.007G040100 [exp] 145 / 2e-38 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10006271 pacid=23181464 polypeptide=Lus10006271 locus=Lus10006271.g ID=Lus10006271.BGIv1.0 annot-version=v1.0 ATGGAGGAACCCCAGAACGGAAATTCGAACGAGAACTCCACCGCGGCGGTCCCGTCGGATGCCGAGGAGCTCGCCGTCGGCCCTGCGCCGCCTCCCAAGG CTCGCGCCAAGCGCCCTCTGGAGTTCGAGCGTGCTTACCTCGACTCCCTTCCCTCTGCCAATATGTATGAGAAAAGTTATATGCATCGAGATGTCGTGAC GCATGTTGCTGCGTCAGGGGCAGAGTTTTTCATTACTGGAAGTCTTGATGGGCATTTGAAATTCTGGAAGAAAAAATCTATTGGCATTGAATTTGCGAAA CATTTCAGATCCCATCTTGGTCCCATAGAAGGATTAGCGGTTAGCATCGATGGTCTGCTTTGTTGCACTATATCCAGTGATCAATCAGTCAAGATCTATG ATGTTGTCAATTATGACATGATGGTCATGATTAGCTTGCCATTTGTTCCTGGGAGTATTGAATGGGTTTATAATCAGGGAGACGTGAAAGCTACGCTTGC AATTAGTGATAGAAACTCCTCATTTGTACACATCTATGATGCACGAGCTGGTACAAACGAACCTATCATCTCCAGAGAGATTCACATGGGACCTGTTAAA GTTATGAAGTACAATCCAGAATTCGATACTGTGATATCTGCTGATGTGAAGGGAATGATTGAATATTGGAGTCCTTCTACGCTTCAGTTCCCAGAGGAAG AGGTGAATTTCAAACTAAAAAGTGATACCAACTTATACGAGATTGTTAAATGCAAAACAAGTGTCTCAACTATTGAGGTCAGCCCCGACGGTAAACAGTT CTCTATTACATCACCTGATCACAGGATACGTGTATTCTGGTTCAGAACGGGTAAACTAAGACGAGTTTATGATGAATCTCTTGAGGTGGCGCAAGATCTG CAAAGGAGTGATGCTCCACTGTACAGATTAGAGGCTATCGATTTTGGACGAAGAATGGCTGTGGAGAAAGAACTTGAGAAAACAGAAACTGCGCCACAGC CAAATGCTGTTTTTGACGAAAGTTCCAATTTCCTCATATATGCAACTTTGTTGGGAATAAAAGTAGTAAATCTGCATACAAATAAAGTTGCACGAATTCT CGGGAAGGTGGAGAATAATGAGAGGTTTTTACGGATTGCCTTATACCAAGGCGACAGAAGCAGTAAAAAAGTTAGAAAAATTCCTTCAGCAGCTGCTAAT GCTAATGAGAGCAAAGACCCTTTGACAGATCCTACTCTTTTATGCTGTGCCTTCAAGAAGCACAGGATCTATCTATTCAGCCGGAGAGAGCCGGAAGAGC CGGAGGATGCAACTAAAGGTAGGGATGTATTCAATGAAAAGCCTCCAGCAGATGAACTCTTGTCTGTCTCCGAAATAGGAAAGGCAGCAGCGTCTGCTCT CCCTGAGAATGTGATTCTTTGTACCACGATGGGCGACGTTCACATGAGACTTTACCCTGAAGAGTGTCCAAAAACTGTGGAGAACTTCACAACTCACTGC CGAAACGGTTACTACGACAACCTGATATTTCACCGTGTGATCAAAGGATTCATGATACAGACGGGAGATCCATTGGGAGATGGCACTGGTGGGCAGTCCA TTTGGGGAAGAGAGTTCGAGGACGAATTTCACAAAAGCTTAAGGCACGATAGGCCATTCACAGTGTCCATGGCGAATGCCGGCCCCAATACTAACGGTTC GCAGTTTTTCATCACCACAGTAGCCACTCCATGGCTGGATAACAAGCATACAGTTTTTGGAAGAGTTGTGAAAGGAATGGATGTAGTCCAGGCTATTGAG AAGGTGAAGACCGACAGGGGCGACAAGCCGTACCAAGATGTGAAAATTCTCAACGTTACCGTGCCGAAGAATTAA
AA sequence Show only first row Show all	>Lus10006271 pacid=23181464 polypeptide=Lus10006271 locus=Lus10006271.g ID=Lus10006271.BGIv1.0 annot-version=v1.0 MEEPQNGNSNENSTAAVPSDAEELAVGPAPPPKARAKRPLEFERAYLDSLPSANMYEKSYMHRDVVTHVAASGAEFFITGSLDGHLKFWKKKSIGIEFAK HFRSHLGPIEGLAVSIDGLLCCTISSDQSVKIYDVVNYDMMVMISLPFVPGSIEWVYNQGDVKATLAISDRNSSFVHIYDARAGTNEPIISREIHMGPVK VMKYNPEFDTVISADVKGMIEYWSPSTLQFPEEEVNFKLKSDTNLYEIVKCKTSVSTIEVSPDGKQFSITSPDHRIRVFWFRTGKLRRVYDESLEVAQDL QRSDAPLYRLEAIDFGRRMAVEKELEKTETAPQPNAVFDESSNFLIYATLLGIKVVNLHTNKVARILGKVENNERFLRIALYQGDRSSKKVRKIPSAAAN ANESKDPLTDPTLLCCAFKKHRIYLFSRREPEEPEDATKGRDVFNEKPPADELLSVSEIGKAAASALPENVILCTTMGDVHMRLYPEECPKTVENFTTHC RNGYYDNLIFHRVIKGFMIQTGDPLGDGTGGQSIWGREFEDEFHKSLRHDRPFTVSMANAGPNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQAIE KVKTDRGDKPYQDVKILNVTVPKN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Lus10006271 [exp]	0	1
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10012908 [exp]	1.4	0.9103
AT1G73020			unknown protein		Lus10009732 [exp]	4.5	0.8982
AT3G19840		ATPRP40C	pre-mRNA-processing protein 40...		Lus10030562 [exp]	5.5	0.8655
AT2G33435			RNA-binding (RRM/RBD/RNP motif...		Lus10023746 [exp]	5.9	0.8727
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10004503 [exp]	9.5	0.8651
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10018019 [exp]	10.5	0.8616
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	12.0	0.8583
AT1G19340			Methyltransferase MT-A70 famil...		Lus10032722 [exp]	13.0	0.8624
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10006516 [exp]	13.1	0.8144
AT5G46680			Pentatricopeptide repeat (PPR-...		Lus10039036 [exp]	13.3	0.8734

Compare expression of checked genes

Lus10006271 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.