Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44610 562 / 0 Protein kinase superfamily protein (.1) AT3G12690 397 / 2e-133 AGC1.5 AGC kinase 1.5 (.1.2.3) AT5G47750 396 / 4e-133 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 389 / 2e-131 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 383 / 3e-129 D6PK D6 protein kinase (.1) AT1G79250 384 / 7e-129 AGC1.7 AGC kinase 1.7 (.1.2) AT1G16440 377 / 1e-126 RSH3 root hair specific 3 (.1) AT5G40030 371 / 1e-124 Protein kinase superfamily protein (.1) AT2G44830 378 / 9e-124 Protein kinase superfamily protein (.1) AT3G27580 372 / 1e-123 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020572 [exp] 812 / 0 AT3G44610 585 / 0.0 Protein kinase superfamily protein (.1) Lus10043435 [exp] 474 / 1e-165 AT3G44610 466 / 2e-162 Protein kinase superfamily protein (.1) Lus10016629 [exp] 399 / 7e-134 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 391 / 6e-131 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10042911 [exp] 387 / 2e-130 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10039105 [exp] 389 / 3e-130 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10030051 [exp] 376 / 4e-126 AT2G26700 577 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10032185 [exp] 375 / 3e-125 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1) Lus10014501 [exp] 374 / 3e-125 AT5G40030 671 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G186200 [exp] 585 / 0 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146500 [exp] 570 / 0 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.008G024000 [exp] 531 / 0 AT3G44610 487 / 1e-170 Protein kinase superfamily protein (.1) Potri.010G236200 [exp] 530 / 0 AT3G44610 497 / 2e-174 Protein kinase superfamily protein (.1) Potri.006G003800 [exp] 399 / 1e-133 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.016G004900 [exp] 397 / 3e-133 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 398 / 4e-132 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 391 / 3e-129 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 380 / 5e-128 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 393 / 2e-127 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006272 pacid=23181455 polypeptide=Lus10006272 locus=Lus10006272.g ID=Lus10006272.BGIv1.0 annot-version=v1.0 ATGGAGCCGCCGCCGTGGATCGACGACTTAGCCGATGACCTACAGAGTGTGAGCTTCACTTCCACAGGAACCGCCGCCACCCTTCACCGCAGTACGAGCT CCGGCTCCTCGTCTTCCGCCACCCTAACCGCCGCCCCCTCCTCAGCCCACACATCCTTCTCCACCAAATCCGCATCCAAACACCCCCTCACCTTCTCGGA TCTGAGATTCTCCCTCCGCCTCGGCTCTGGCGACATCGGCTCCGTCTACCTTGCGGAGCTCAAGAGATCGAAGTCCACCTCCGACGACTCCGGCGCAGAA ATCGCGATCTTCGCTGCCAAGGTCATGGACAAGAAGGAGCTCGTTAGCAGGAACAAGGAAGGCAGGGCGAGGACTGAGAAGGAAATTCTCGAAATGCTCG ACCATCCGTTCCTCCCCGCGCTCTACGCTTGCATCGAATCGCCAAGGTGGCTGTGTTTATTGACCGAGTTCTGCCCCGGCGGCGACCTCCACGTGCTGCG CCAGCGCCAACCGCTCAAACGATTCGAGGAATCTGCCGTCAGGTTTTACGCATCAGAAGTAGTAGTGGCATTGGAGTATCTGCACATGTTAGGAATCGTC TACCGTGACCTCAAGCCGGAGAACGTCCTAGTCCGCTCCGACGGCCACATAATGCTCACCGACTTCGACCTCTCCTTAAAATGCGACGCCTCCGCTTCAA CTCCCCAAGTAATCCTGTCCACCACCGGCCAAAACCAACCTCCCTCTGGCGCCACCCTCTCCACCACCGGCGCCGATCAAAACAACAACCGCTTCACCTC ATCCTCATGCATCCTCCCAAGCTGCATAGTCCCATCAGTCTCATGCTTCCACCCAAACTTCAAACGCAAGAAAAACAAATCCTCCTCCAACCGCCGCTAC TCCAACGCTCCCGAGTTCGTCGCCGAGCCAGTCGACGTCCGGTCAATGTCGTTCGTCGGCACCCACGAGTACCTCGCCCCTGAAATCGTCTCTGGCGAGG GCCACGGCGGGGCGGTGGATTGGTGGACTTTGGGGATATTTATGTACGAGATGTTCTACGGCGTCACTCCTTTCAAAGGGGTTGACCATGAGTTGACTCT AGCTAACATTGTAGCTAGAGCTCTGGACTTCCCTCCGAAAGATGGGGCTGCCGTGCCGGCAGCGGCTAAGGACTTGATGTCGCAGCTACTGGTTAAGGAT CCCGCGAGGAGGCTGGGGTCGACGATGGGCGCTTCGGCGATTAAGCATCATGAGTTTTTCAAAGGGGTGAATTGGGCTTTGTTGAGGTGTGCTAAGCCGC CGTATGTTCCGGCGCCGTTTAGTAGGGATGTTGTGTCGTCGGACGATAGTTGTCCTCAGACTCCGGTTGAATATTATTGA
AA sequence Show only first row Show all	>Lus10006272 pacid=23181455 polypeptide=Lus10006272 locus=Lus10006272.g ID=Lus10006272.BGIv1.0 annot-version=v1.0 MEPPPWIDDLADDLQSVSFTSTGTAATLHRSTSSGSSSSATLTAAPSSAHTSFSTKSASKHPLTFSDLRFSLRLGSGDIGSVYLAELKRSKSTSDDSGAE IAIFAAKVMDKKELVSRNKEGRARTEKEILEMLDHPFLPALYACIESPRWLCLLTEFCPGGDLHVLRQRQPLKRFEESAVRFYASEVVVALEYLHMLGIV YRDLKPENVLVRSDGHIMLTDFDLSLKCDASASTPQVILSTTGQNQPPSGATLSTTGADQNNNRFTSSSCILPSCIVPSVSCFHPNFKRKKNKSSSNRRY SNAPEFVAEPVDVRSMSFVGTHEYLAPEIVSGEGHGGAVDWWTLGIFMYEMFYGVTPFKGVDHELTLANIVARALDFPPKDGAAVPAAAKDLMSQLLVKD PARRLGSTMGASAIKHHEFFKGVNWALLRCAKPPYVPAPFSRDVVSSDDSCPQTPVEYY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44610			Protein kinase superfamily pro...		Lus10006272 [exp]	0	1
AT1G61150			LisH and RanBPM domains contai...		Lus10011219 [exp]	4.2	0.8995
					Lus10037253 [exp]	4.9	0.8920
AT3G48610		NPC6	non-specific phospholipase C6 ...		Lus10035935 [exp]	6.5	0.8731
AT5G13890			Family of unknown function (DU...		Lus10012588 [exp]	7.0	0.9060
AT2G39020			Acyl-CoA N-acyltransferases (N...		Lus10023533 [exp]	8.7	0.8962
AT1G66080			unknown protein		Lus10031356 [exp]	9.5	0.8952
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10009842 [exp]	9.6	0.8972
AT1G08480		SDH6	succinate dehydrogenase 6, unk...		Lus10013373 [exp]	11.4	0.8743
AT1G19480			DNA glycosylase superfamily pr...		Lus10010824 [exp]	15.9	0.8859
AT3G59840			unknown protein		Lus10030936 [exp]	16.5	0.8701

Compare expression of checked genes

Lus10006272 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.