Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36350 576 / 0 Protein kinase superfamily protein (.1) AT3G52890 575 / 0 KIPK KCBP-interacting protein kinase (.1.2) AT5G03640 558 / 0 Protein kinase superfamily protein (.1) AT5G47750 538 / 0 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 520 / 5e-179 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT5G55910 514 / 1e-176 D6PK D6 protein kinase (.1) AT3G27580 501 / 3e-170 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) AT2G44830 489 / 3e-163 Protein kinase superfamily protein (.1) AT5G40030 476 / 4e-162 Protein kinase superfamily protein (.1) AT3G12690 466 / 1e-156 AGC1.5 AGC kinase 1.5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020571 [exp] 1228 / 0 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1) Lus10035591 [exp] 592 / 0 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10008634 [exp] 586 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10016629 [exp] 529 / 0 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10039105 [exp] 525 / 9e-180 AT5G47750 792 / 0.0 D6 protein kinase like 2 (.1) Lus10038753 [exp] 524 / 3e-179 AT5G47750 794 / 0.0 D6 protein kinase like 2 (.1) Lus10022272 [exp] 523 / 4e-178 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10042911 [exp] 504 / 1e-172 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10032185 [exp] 474 / 1e-160 AT5G40030 669 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G186300 [exp] 686 / 0 AT2G36350 623 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146700 [exp] 680 / 0 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1) Potri.006G114900 [exp] 605 / 0 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.016G004900 [exp] 541 / 0 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.006G003800 [exp] 534 / 0 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.014G047500 [exp] 528 / 1e-178 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.001G344600 [exp] 517 / 3e-175 AT3G27580 647 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Potri.002G137700 [exp] 514 / 1e-173 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.017G075400 [exp] 479 / 5e-163 AT5G40030 699 / 0.0 Protein kinase superfamily protein (.1) Potri.010G175900 [exp] 469 / 1e-157 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10006273 pacid=23181459 polypeptide=Lus10006273 locus=Lus10006273.g ID=Lus10006273.BGIv1.0 annot-version=v1.0 ATGGATGGATTCCGTAGCACGTCTGAAATCGTGGAATCGACGGAGGAAGAAGTAGACCTCAATGGAAGGAAAGGTGGGAACAAATACTCTATAGAAGATG ACATCAATCGTCTTTTCGAATCAATAGAGATAAGGACGAAGAAAGGTCATGAAGGTGGTGGCAGAGATTCTCTGCTGAAGAAAGCCATGAAGAGACCTAT GAGATCCGGTTCTTCGCCTCAAGCATCCGGGATCGGCATTTCAGAGCATGTGAGTTTGAAGCAGGCTCTGAGAGGGTTGTGCATATCACAAGCCTCGGAG ATTGCTGCTACGAAGAGATTGTCGAAACTTCCCGGTTCTTCTTCGTCTAGTAATTCGGAGGCTGGACCTATCAAAAGTCTGTATAGTACTACTGTAGTAG TCGAGGCTGATGGATCATCAGGTAGCGGAAATGTGGTTGAAATCTCACTTGTTCCTGAAGCAGAATCATCATCCAGCTCTACTGGAAATGTTGTTGAATC GGGAGAGTTTGCAGATCAAAGTGATCGTTCTTCTCAGTGCTTTGACACGAAGGTTTTAGACTCGGTTCACGGTTCAAGTCATCCTGTTGCAGAAACGTCT TCAGTTTATAGTAGTCCGAGATCTATAAAGCCGATTTTCGGGAGCAGGGGCTTTAGCAAGAAGAAAGTAAAGAAAGATTCTCAATTTGCTTCCAATAGCT CAGATCCTTCTGATATGGATCCTTGTACTAGTACTGAGTCGAGTTGCCGCACTTTGGACATTGGTTCGAGTAAACCGGTATGTACCGGATCCATTTCTAA ACTGACAAAGATCGATGAAACATCCGGATCAAAGGAAAAGGGAGAATTTTCCCAGAGCTCAAAGAGCAGCATTGGTGAATACAGCAGTAGTAGCACAAGT ACGAGTGAAGATAGCAGCATTGGCTCGAGTCGTGTTGGGCAAAACCGGCCTCATATGTCAAAAGACTTGAGGTGGGAAGTGATTCGCCAGATTCAGACGC AGCACGGAAGCTTACGTTTGAGGCACTTTAAGCTAGCGAAGAAGCTTGGCGGAGGGGATATCGGATTGGTTTATTTGGCGAAGCTGTCCGGTACCGATTG CCAGTTTGCTCTGAAAGTGATGGATAATGAGTTCTTGGCGAGTAGGAAGAAGATGGTTAGGGCACAGACTGAACGAGAGATTCTGCAGATGTTGGATCAT CCGTTTCTACCGACTCTTTATGCTCATTTCTTGTCGGAGAAGTCGTCATGCTTGGTTATGGAGTACTGCCCTGGTGGAGATCTCCATGTTCTTAGGCAGA AGCAACCCGGCAGATGTTTCTCCGAACCGGCAACAAGATTCTATGTTGCTGAAGTTCTTCTTGCACTAGAGTACCTCCACATGCTTGGAGTTGTATACAG AGATCTTAAACCGGAGAATGTTCTCATCCGAGAAGACGGTCACATAATGCTCTCGGATTTCGATCTCTCACTGCGGTGTTCCGTCAATCCAGTCCTACTT CAATCCTCGTCTCCAGATATCGGCCCCCCCAAAAAGACGTCCTCGTCCGAATCAAGCTGCATCGACCCTTTCTGTCTCCACCCGTCCTGGCAAGTCTCGT GCTTCACGCCTCGGCTTCTCTCCATTGCTACAAAATCGGCGAACAAATGTGACCTCAGCGCTCAGGTCAGCCCGTTGCCGCAACTGGTAGTCGAGCCAAC GGCAGCTCGTTCCAACTCGTTCGTCGGGACGCACGAGTACCTCGCTCCAGAGATCATCAAGTCCGAGGGGCATGGCAGTGCGGTCGACTGGTGGACTTTC GGCATCTTCCTTTTCGAGCTTTTGTACGGTACAACGCCATTTAAAGGTTTGGGGAACGATGAGACGCTGGCCAATGTCGTGTCAAGGAGCCTCAAGTTCC CAAGCAGCCATATGGTTAGCTTCCATGCTCGGGACTTGATAAGAGGACTGTTGATCAAGGAGCCCAAGCATCGGCTAGGGTCTTCGAAAGGTGCTGCCGA GATCAAGCAGCATCCTTTCTTCAAAGGGCTCAACTGGGCTCTCGTACGTTGCATGGCTCCTCCGGATACCGCTCGGGCTAGCTTGCCCATTTCGTCATTT TGTGACAAGGGTGCGGGAGATAAGGATGAGTTCGATTTGTTCTAG
AA sequence Show only first row Show all	>Lus10006273 pacid=23181459 polypeptide=Lus10006273 locus=Lus10006273.g ID=Lus10006273.BGIv1.0 annot-version=v1.0 MDGFRSTSEIVESTEEEVDLNGRKGGNKYSIEDDINRLFESIEIRTKKGHEGGGRDSLLKKAMKRPMRSGSSPQASGIGISEHVSLKQALRGLCISQASE IAATKRLSKLPGSSSSSNSEAGPIKSLYSTTVVVEADGSSGSGNVVEISLVPEAESSSSSTGNVVESGEFADQSDRSSQCFDTKVLDSVHGSSHPVAETS SVYSSPRSIKPIFGSRGFSKKKVKKDSQFASNSSDPSDMDPCTSTESSCRTLDIGSSKPVCTGSISKLTKIDETSGSKEKGEFSQSSKSSIGEYSSSSTS TSEDSSIGSSRVGQNRPHMSKDLRWEVIRQIQTQHGSLRLRHFKLAKKLGGGDIGLVYLAKLSGTDCQFALKVMDNEFLASRKKMVRAQTEREILQMLDH PFLPTLYAHFLSEKSSCLVMEYCPGGDLHVLRQKQPGRCFSEPATRFYVAEVLLALEYLHMLGVVYRDLKPENVLIREDGHIMLSDFDLSLRCSVNPVLL QSSSPDIGPPKKTSSSESSCIDPFCLHPSWQVSCFTPRLLSIATKSANKCDLSAQVSPLPQLVVEPTAARSNSFVGTHEYLAPEIIKSEGHGSAVDWWTF GIFLFELLYGTTPFKGLGNDETLANVVSRSLKFPSSHMVSFHARDLIRGLLIKEPKHRLGSSKGAAEIKQHPFFKGLNWALVRCMAPPDTARASLPISSF CDKGAGDKDEFDLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52890		KIPK	KCBP-interacting protein kinas...		Lus10006273 [exp]	0	1
AT5G63930			Leucine-rich repeat protein ki...		Lus10023680 [exp]	3.9	0.9056
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Lus10039607 [exp]	5.3	0.8943
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10025928 [exp]	7.0	0.9039
					Lus10043486 [exp]	9.4	0.9303
AT2G36350			Protein kinase superfamily pro...		Lus10020571 [exp]	9.9	0.8766
AT1G19835			Plant protein of unknown funct...		Lus10012431 [exp]	11.0	0.9075
					Lus10043485 [exp]	13.3	0.9219
AT5G63930			Leucine-rich repeat protein ki...		Lus10011761 [exp]	14.1	0.8623
AT2G33170			Leucine-rich repeat receptor-l...		Lus10023681 [exp]	15.8	0.8688
AT5G65160		TPR14	tetratricopeptide repeat 14, t...		Lus10016804 [exp]	16.1	0.8431

Compare expression of checked genes

Lus10006273 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.