Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44680 755 / 0 HDA09, HDA9 histone deacetylase 9 (.1) AT4G38130 499 / 1e-174 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT5G63110 480 / 5e-167 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) AT5G35600 394 / 4e-134 HDA7 histone deacetylase7 (.1) AT3G44490 244 / 3e-79 HDA17 histone deacetylase 17 (.1) AT3G44660 206 / 1e-64 HDA10 histone deacetylase 10 (.1) AT1G08460 100 / 1e-22 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT3G18520 90 / 8e-19 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT5G61060 83 / 2e-16 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT5G61070 81 / 6e-16 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020570 [exp] 820 / 0 AT3G44680 806 / 0.0 histone deacetylase 9 (.1) Lus10001605 [exp] 515 / 4e-176 AT4G38130 833 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10001356 [exp] 487 / 3e-169 AT4G38130 809 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Lus10019486 [exp] 473 / 5e-164 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10043337 [exp] 420 / 3e-144 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10001850 [exp] 96 / 3e-21 AT1G08460 558 / 0.0 histone deacetylase 8 (.1) Lus10013343 [exp] 95 / 7e-21 AT1G08460 559 / 0.0 histone deacetylase 8 (.1) Lus10034689 [exp] 93 / 1e-19 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10024919 [exp] 87 / 4e-18 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G460000 [exp] 767 / 0 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.004G209800 [exp] 505 / 2e-176 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.009G170700 [exp] 500 / 2e-174 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.015G082500 [exp] 484 / 1e-168 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.012G083800 [exp] 479 / 5e-167 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.011G156250 [exp] 107 / 2e-28 AT3G44680 97 / 7e-26 histone deacetylase 9 (.1) Potri.004G092900 [exp] 88 / 2e-18 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.012G060400 [exp] 84 / 5e-17 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.009G020500 [exp] 82 / 1e-16 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.005G064200 [exp] 77 / 7e-15 AT4G33470 622 / 0.0 histone deacetylase 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10006274 pacid=23181453 polypeptide=Lus10006274 locus=Lus10006274.g ID=Lus10006274.BGIv1.0 annot-version=v1.0 ATGAAGTCGAAGGAAAAAATATCCTATTTTTACGATGGGGATGTTGGCAGTGTTTACTTTGGTCCGAATCACCCGATGAAACCGCACAGGCTGTGTATGA CCCACCATCTTGTTCTTTCTTATGACCTTCACAAGAAGATGGAGATTTATCGGCCACACAAGGCATACCCGGTTGAACTAGCTCAGTTCCATTCTGCTGA TTACGTTGAGTTCTTGCACCGGATTACACCTGATACTCAGCACTTGTACAGAACTGACTTAGCTAGATATAATCTTGGAGAAGATTGCCCCGTGTTCGAG AATCTGTTTGAATTTTGTCAAATCTATGCTGGGGGGACAATAGACGCCGCTCGAAGATTGAACAACCAACTGTGTGATATTGCTATAAATTGGGCTGGTG GATTACATCATGCCAAAAAGTGCGAGGCATCTGGATTTTGTTACATCAACGACTTGGTTCTCGGGATCTTGGAGCTTCTAAAATACCATGCTCGTGTTCT GTACATAGACATAGATGTCCATCATGGTGACGGCGTAGAGGAGGCCTTCTATTTTACTGACAGGGTGATGACTGTAAGTTTTCACAAGTTTGGAGATTTG TTCTTCCCCGGAACCGGTGATGTTAAGGAAATAGGAGAAAGAGAAGGGAAGTTCTACGCCATAAATGTTCCTCTTAGGGACGGGATAGATGACTCGCGCT TCAACCGTCTCTTTAAAACCATCATATCAAAGGTTGTAGAAATCTACCAACCTGGTGCTATAGTTCTCCAATGTGGAGCAGATTCGCTGGCTGGGGACCG TTTGGGCTGTTTCAATCTCTCGATCGATGGTGAAATTCTCGATCTTTGCCCTCTTATATCAATCATTTTCTTACTTTCAAGTTACTTCTATCTTTCAGGA CATGCGGAATGTGTTAAGTTTGTGAAGAAGTTCAACATTCCTTTACTGGTTACTGGAGGTGGAGGATATACGAAGGAGAATGTAGCTCGATGCTGGACAG TTGAAACAGGAGTATTGCTGGATACTGAACTTCCCAATGAGATCCCTGAAAATGAGTACATCAAGTATTTCGGACCTGACTATACGTTGAAGATTCCGAG CAGACATATTGAGAACTTCAACAGTAAATCCTATCTCAGCTCCCTCAAAGTTCAAGTAATGGAAAATTTGCGGTACATTCAGCACGCTCCGAGTGTGCAG ATGCAAGAGGTTCCACCGGATTTTTACATCCCAGACTTCGACGAAGATGAGCAGAACCCAGATGATCGAATGGATCGTAAGTCAGAACTGTACAACCACA CTTCTTGCATACAGTATAGAATCGTGTCACCTTTCTCACAACCTTTTTCACTGTTGTTTCAGAGCATACTCGAGACAAGCAAGTCCAGCGAGACGATGAA TACTACGACAGGGACAATGACAACGACCCCACAGATCAATCGTGATGGTGTGGTGGTAAAGCTTCTAGTTCATGCTAGTTCAGATGATTCGTACATGCTA TCCTGA
AA sequence Show only first row Show all	>Lus10006274 pacid=23181453 polypeptide=Lus10006274 locus=Lus10006274.g ID=Lus10006274.BGIv1.0 annot-version=v1.0 MKSKEKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLYRTDLARYNLGEDCPVFE NLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDL FFPGTGDVKEIGEREGKFYAINVPLRDGIDDSRFNRLFKTIISKVVEIYQPGAIVLQCGADSLAGDRLGCFNLSIDGEILDLCPLISIIFLLSSYFYLSG HAECVKFVKKFNIPLLVTGGGGYTKENVARCWTVETGVLLDTELPNEIPENEYIKYFGPDYTLKIPSRHIENFNSKSYLSSLKVQVMENLRYIQHAPSVQ MQEVPPDFYIPDFDEDEQNPDDRMDRKSELYNHTSCIQYRIVSPFSQPFSLLFQSILETSKSSETMNTTTGTMTTTPQINRDGVVVKLLVHASSDDSYML S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Lus10006274 [exp]	0	1
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006094 [exp]	2.2	0.8084
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001100 [exp]	6.0	0.8617
AT3G56720			unknown protein		Lus10038984 [exp]	44.8	0.7985
AT1G58220	MYB		Homeodomain-like superfamily p...		Lus10028172 [exp]	48.1	0.7276
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10009064 [exp]	53.9	0.7901
AT5G67170			SEC-C motif-containing protein...		Lus10006255 [exp]	65.4	0.7851
AT5G14520			pescadillo-related (.1)		Lus10001361 [exp]	73.7	0.7767
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Lus10008143 [exp]	74.3	0.7393
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10039831 [exp]	83.1	0.7692
AT1G29400		AML5	MEI2-like protein 5 (.1.2)		Lus10004591 [exp]	91.3	0.7742

Compare expression of checked genes

Lus10006274 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.