Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66950 1674 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 1659 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT1G15520 1476 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT1G15210 1403 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT3G16340 1398 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G59870 1394 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT2G26910 1391 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT2G29940 1307 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT2G37280 1269 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1) AT3G53480 1251 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020568 [exp] 2590 / 0 AT1G66950 1761 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10008984 [exp] 1631 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10041668 [exp] 1478 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008090 [exp] 1467 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 1447 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10014150 [exp] 1431 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Lus10019453 [exp] 1419 / 0 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Lus10024060 [exp] 1412 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10025824 [exp] 1410 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G024400 [exp] 1746 / 0 AT1G66950 2011 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.006G115000 [exp] 1726 / 0 AT1G66950 2148 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Potri.009G147100 [exp] 1600 / 0 AT2G36380 1759 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Potri.018G032900 [exp] 1525 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 1523 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 1513 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 1509 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 1501 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 1500 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 1500 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0181 [flax] [poplar] ABC-2 PF01061 [flax] [poplar] ABC2_membrane ABC-2 type transporter CL0181 [flax] [poplar] PF08370 [flax] [poplar] PDR_assoc Plant PDR ABC transporter associated CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10006277 pacid=23181448 polypeptide=Lus10006277 locus=Lus10006277.g ID=Lus10006277.BGIv1.0 annot-version=v1.0 ATGGGGGATAGGCGGTTGGCCAACGATGACGAGGTGACGAACTCGTTCACCTCGTCCTTGTCGTTGACTGATAGTGAGACCGAAGATGGTACTAGTGAGA GTACTGTAGGGCGTGCAGGGGAATCAGCGGAGGAACACGTGAGGTGGCGGGCGATAGAGAGGCTGCCGACATGGAAGAGGGTGAGGAAAGGAATGATGAT GCATAGCGGAGGAGGAGGAGGTGAGGCGTTGGTGGTGCCGGTAGAAGTGGACGTGAGGAAAATGGATTTGAGAGATAATATTCTATTGCTCGAGAACCTT CTCAAGGTTCCCGAGACCGACAACGAGAAGTTGTTGCGGGACATCCGTAGCAGGATCAACAGGGTCGGAATTGAAATCCCCAACATTGAAGTTAGATTCC AAAATTTGTCAATTGAAGGAGAAGCCTACATTGGAACAAGAGCACTCCCAACACTTATAAATTCCACTCTAAATGCAATTGAGGGAGTTCTCGAGTGCAT CGGCGTTTCTGTGTCGAAGAAAAACGTCGTCAAGATACTACAAGATGTTAATGGCATAGTTAAACCATCAAGGTTGACCTTGCTTCTTGGTCCTCCTGGC TCTGGCAAAACCACACTATTAAAAGCACTTGCTGGGAAACTAGACAAAAATTTGAAGGTTTCCGGCAAGATCACGTACTGCGGCCACGAGTTCTCGGAGT TCGTCCCTCAAAGAACATCGGCTTACATCAGCCAACACGACCTCCACTATGGCGAGATGACGGTGAGGGAGACGTTACAGTTTTCCCGGCGGTGCTTAGG TGTCGGCAGCCGACAACTTATGTTGGAGGAGTTGCTCCGACGTGAGAAAACAGCCGGCATTGTGCCCGATTTCGACGTCGATGCTTTCATGAAGGCAACC ACAGTGGCCAGCCAACGGGCTACTCTGTTCACAGACTATGTTCTCAAGATTCTTGGACTTGACATATGCGCCGACACGGTCGTCGGAGATGAAATGCGGA GAGGCATCTCTGGTGGACAGAAGAAACGTGTCACTACAGGTGAGATGTTAACCGGACCTGCGAAAGTGTTTTTCATGGACGAAATATCAACGGGGCTAGA CAGCTCCACTACCTACAACATCATAAACTTCCTCAAACAGATTGCTCACATCATGGACGAAACCATCGTCGTCTCCCTCCTCCAGCCATCCCCGGAAACC TTCAACCTCTTTGACGACGTCATTTTACTTGCTGAATCCCGAATCGTCTACCAAGGCCCGAAATCCCAGATCCTGCAATTCTTCGAATCCCAAGGATTCA AATGTCCCGACAGAAAATCTGTTGCGGACTTCATCCAGGAGGTAACCTCCCGGAAGGACCAATTTCGCTATTGGACGGGTCTGGCCAATCAGACCCACCC GTACCGGTTCGTCACAGTAACCGATTTCTCCAAATGCTCCGACCGAACCGGAGTTTCGGACTTTTCAGATATCGAAAAATCAAAAACCCACCCGGCCGCT CTGGAGAAGGCGAAGTACGCCATTTCGAAATGGGACCTTTTCAGGGCTTGTTTTGAGAGGGAGTGGCTGTGGATGAAGAGGAATTCGATTGTGTTCGTGT TCAAAACGGTGCAGATAGGGATCATGGCAGTGATTTCGTCGACAGTGTTCTTGAGGACGGAGATGAACCCGGGGGAGCTCGACGGCGTGGCCAAGTATGG GGGTGCTCTCTTTTTTAGTCTTAATAATGTTCTGTTCAATGGGTTGCCGGAGATTGCGATGACGACGATGAAGCTGCCAGTTTTTTTCAAACAGAGGGAT CTGTTGTTCTATCCGGCTTGGGTTTTCGCTCTGCCGATTTGGGTTTTGAGTGTTCCGGTTTCGGCGGTTGAGTCCGGGATTTTGACCGGGATTACTTACT ACTCCATTGGGTTTGCTCCTGATGCCACCAGGTTTTTGAAGCAATTCCTGGCCTTATTCGGTATCCACCAAATGTCAATGTCTCTATACCATTTCACAGG AGTACTAGGCAGGATAGAGGTCATTGCAACCACAATTGCCACATTTGCCTTGCTCATCTTCTTCTTGCTCGGAGGCTACATTGTCGCGAAATATGACATT GCAGGATGGATGAGGTGGTGCTACTATCTCTCTCCGGTCATGTATGGACAGAATGCCATCGCCATCAATGAATTTCTCGATGACAGGTGGAACATGGCTA CAGGTAACGAAACTGTACCGACCATCGGGATGGCGTTTCTTAACCAGAGAGGCATGTTTACAATGGAGAAATGGTACTGGATTTCCATCGCGGCGCTTTT TGGGTTCACTGTGTTTTTCAATGTGCTCTTCATCCTGGCACTGAAGTACCTTAAACCTCTTGGGGAGAACAAGGTAATGGTTGTACACAAGGAAGAGGAA ACATTGCCTTTGGTTACCAAATTAGAAGAGGGGAAATCTCAAGGAAGTGGTGACTATACTGATAATGAAAATGAAGAACATGATCAAAGTAGGAAAGGGA TGGTTTTGCCTTTCCAACCTCTTTCACTTGCTTTCAGCCATGTCAACTATTATGTGGACATGCCATCTGAAATGAAGAGTCAAGGGTTGAAAGAGAGCAC TAGGTTGCAACTGTTACGTGATGTTAGTGGTGCATTTAGGCCTTGTGTTTTGACTGCATTGGTTGGAGCTAGTGGAGCTGGGAAGACAACGTTGATGGAT GTGCTAGCCGGACGAAAGACCGGTGGGTACATTGAAGGAAGCATAACCATATCCGGTTACCCAAAACACCAACGGACTTTCGCACGAGTTAGTGGCTATT GTGAGCAAAATGACATCCACTCGCCTTATGTTACTGTCTACGAGTCCCTCGTTTTCTCTGCCTGGCTACGGCTCAGCTCTGATATCAATGAAGAAACTAG AAAGATGTTTGTAGAAGAAGTGATGGAGTTGATTGAGCTGAACCCAATAAGGGATGCACTAGTCGGACATCCAGGAGTGGATGGACTATCAACAGAGCAA AGAAAGAGGCTAACCATCGCCGTGGAACTCGTCGCAAATCCTTCCATCATCTTCATGGACGAACCAACTTCAGGACTGGATGCCAGGGCCGCTGCTATAG TGATGCGCACGGTAAGAAACACAGTGGACACTGGAAGAACCGTCCTGTTATTGATGAAAAGAGGAGGGAGAGTGATCTATGCTGGTCCTCTAGGTCACCA TTCTTGCGAGCTTGTTTCATACTTCGAGGCCATTCTAGGGGTTGAAAAGATAAGGGAAGGCTACAATCCAGCTGCATGGATGTTGGAGGTGACCTCTACT TCAGTAGAGGCCAAACTCGGCATAGACTATGCCGAACTTTACACAAATTCTCAGCTTTATAGTCGGAATGAAGAGCTCATCAAAGAACTCGGCACTCCAA CACCCGAGTCCCAAAATCTCCACTTCCCGACGCGATTCTCGCAGGGCTTCTTCAGTCAATGCAGGGCCTGCTTCTGGAAACAGCACTGGTCGTACTGGAG GAACTCGCAGTACAATGCAATCCGATTCTACGTCACGATTGTCATTGGGGTCCTCTTCGGAATCGTGTTTTGGAGCAAAGGGGACGAAATACATAAGGAA CAAGATTTACTGAACCTACTTGGAGCTACGTATGCCGCGGTTCTGTTCCTCGGTGCGAGTAATGCAGCTGCGATACAACCAGTGGTTTCGATGGAGAGGA CCGTGTTTTATAGGGAACGAGCCGCTGGGATGTACTCTGCGTTGCCTTACGCATTTGCTCAGGTTGCAATAGAGACGATATACGTTGCGGTGCAATCACT GATCTATGCAGGACTTCTGTACTCAATGATTGGGTACCATTGGAACATCAAGAAGTTCTTCTACTTCTATTACTTCCTCTTCATGTGCTTCACTTACTTC TCAACCTATGGGATGATGACAGTGGCAGTGTCTCCTAATCTGGAGATTGCTTCCATCATCATGTTGTTCTTCACCACCATTTGGAACTTGTTCAGCGGCA TCTTCATCTCCAAGTCGGATCTCCCAATATGGTGGAGATGGTACTATTGGTTCTGCCCACTTGCATGGACGATCAAGGGAGCTTTCACCTCTCAATTTGG CGACTTGAACCATCTAATCGAAATCCCATTGTCGGACCCGATCCCGGTTGATGTGTTCCTTGAAGAGAGTTTTGGGTATCATTTTAGCTCTTTGGGGAGT GTGGTTTTGGCCCACGTTGGATGGGTTTTCCTCTTTGCTTTTGTTTTTGCTTATAGCATCAAGTTCCTCAATTTCCAGAAACGATGA
AA sequence Show only first row Show all	>Lus10006277 pacid=23181448 polypeptide=Lus10006277 locus=Lus10006277.g ID=Lus10006277.BGIv1.0 annot-version=v1.0 MGDRRLANDDEVTNSFTSSLSLTDSETEDGTSESTVGRAGESAEEHVRWRAIERLPTWKRVRKGMMMHSGGGGGEALVVPVEVDVRKMDLRDNILLLENL LKVPETDNEKLLRDIRSRINRVGIEIPNIEVRFQNLSIEGEAYIGTRALPTLINSTLNAIEGVLECIGVSVSKKNVVKILQDVNGIVKPSRLTLLLGPPG SGKTTLLKALAGKLDKNLKVSGKITYCGHEFSEFVPQRTSAYISQHDLHYGEMTVRETLQFSRRCLGVGSRQLMLEELLRREKTAGIVPDFDVDAFMKAT TVASQRATLFTDYVLKILGLDICADTVVGDEMRRGISGGQKKRVTTGEMLTGPAKVFFMDEISTGLDSSTTYNIINFLKQIAHIMDETIVVSLLQPSPET FNLFDDVILLAESRIVYQGPKSQILQFFESQGFKCPDRKSVADFIQEVTSRKDQFRYWTGLANQTHPYRFVTVTDFSKCSDRTGVSDFSDIEKSKTHPAA LEKAKYAISKWDLFRACFEREWLWMKRNSIVFVFKTVQIGIMAVISSTVFLRTEMNPGELDGVAKYGGALFFSLNNVLFNGLPEIAMTTMKLPVFFKQRD LLFYPAWVFALPIWVLSVPVSAVESGILTGITYYSIGFAPDATRFLKQFLALFGIHQMSMSLYHFTGVLGRIEVIATTIATFALLIFFLLGGYIVAKYDI AGWMRWCYYLSPVMYGQNAIAINEFLDDRWNMATGNETVPTIGMAFLNQRGMFTMEKWYWISIAALFGFTVFFNVLFILALKYLKPLGENKVMVVHKEEE TLPLVTKLEEGKSQGSGDYTDNENEEHDQSRKGMVLPFQPLSLAFSHVNYYVDMPSEMKSQGLKESTRLQLLRDVSGAFRPCVLTALVGASGAGKTTLMD VLAGRKTGGYIEGSITISGYPKHQRTFARVSGYCEQNDIHSPYVTVYESLVFSAWLRLSSDINEETRKMFVEEVMELIELNPIRDALVGHPGVDGLSTEQ RKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVLLLMKRGGRVIYAGPLGHHSCELVSYFEAILGVEKIREGYNPAAWMLEVTST SVEAKLGIDYAELYTNSQLYSRNEELIKELGTPTPESQNLHFPTRFSQGFFSQCRACFWKQHWSYWRNSQYNAIRFYVTIVIGVLFGIVFWSKGDEIHKE QDLLNLLGATYAAVLFLGASNAAAIQPVVSMERTVFYRERAAGMYSALPYAFAQVAIETIYVAVQSLIYAGLLYSMIGYHWNIKKFFYFYYFLFMCFTYF STYGMMTVAVSPNLEIASIIMLFFTTIWNLFSGIFISKSDLPIWWRWYYWFCPLAWTIKGAFTSQFGDLNHLIEIPLSDPIPVDVFLEESFGYHFSSLGS VVLAHVGWVFLFAFVFAYSIKFLNFQKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	0	1
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	1.4	1.0000
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	2.0	1.0000
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	2.4	1.0000
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	2.8	1.0000
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10017911 [exp]	3.5	1.0000
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	3.7	1.0000
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Lus10034967 [exp]	3.9	0.9713
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	3.9	1.0000
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10039859 [exp]	4.2	1.0000
AT5G58850	MYB	ATMYB119	myb domain protein 119 (.1)		Lus10040684 [exp]	4.5	1.0000

Compare expression of checked genes

Lus10006277 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.