Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22430 117 / 2e-27 unknown protein AT1G78810 47 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020567 [exp] 725 / 0 AT3G22430 129 / 8e-33 unknown protein Lus10021918 [exp] 93 / 8e-20 AT3G22430 298 / 6e-97 unknown protein Lus10041203 [exp] 44 / 9e-05 AT3G22430 186 / 2e-57 unknown protein Lus10021917 [exp] 42 / 0.0005 AT3G22430 125 / 2e-34 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G147201 [exp] 337 / 1e-100 AT3G22430 148 / 3e-37 unknown protein Potri.010G235700 [exp] 225 / 6e-62 AT3G22430 125 / 4e-30 unknown protein Potri.008G024500 [exp] 199 / 4e-53 AT3G22430 127 / 1e-30 unknown protein Potri.008G152900 [exp] 135 / 2e-33 AT3G22430 409 / 2e-138 unknown protein Potri.010G087400 [exp] 128 / 3e-31 AT3G22430 418 / 3e-142 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10006278 pacid=23181452 polypeptide=Lus10006278 locus=Lus10006278.g ID=Lus10006278.BGIv1.0 annot-version=v1.0 ATGAGGGACCGGCGGTACGACGGTCGGAGAACTCCGTCTCCTCATCCATCGCCGCCGGCAAGGGGAAGAGGCCGCGACTACAGAGAGGACAAGTGGCGGC TCCCTACTTCATCCTACAGGGCTCCACCACCGGGCCCACAGTGGTCAGAGCGGGACCCGCTGCCGCCGCCGCCGAAGACGTCAAGACCACCTGCTTCTTT CGTTCCCCGGCGAGAGAGCGAATACCACACAGTAAGGAACCGGAACAGGTCGCCGCCAAGGTCCAGGTTTAGGTCTCCGAGATGGCAACAACCCCAAAGA ATCGCCAGCCAATACGGGCGCGCGGATGATTCCGTCAGCCGGCGGAGAGATTACAAGGACGATAGGCTGTATTCCGATGAGAGATATGTTCGGAGGGAGG ACAAGCTTCCTTCGATTGGCGAGTCTCTACCGAGGAAGGAATTATCTGGTAAGTTCCAATGGGATAACTTACCTGATAGATCCACAAATCTCAGTCCAGC TGCGTATAGAGATGTTGTTGGTGGTTCGAATCCGTTCAATACTAGGGTTTCTGCTTCAGCTGAGCTGATTGTAAGAGAGAGGCCAAGAACACACTATGAT TACAGCATCAAACCGCAGGTTAGGGCTGGTAGGGTTGCTGATTGGGATTCTTCAGATAAGATTCATAGGGAGGAACAACCATTAGTAGGGAATGAAGATT ATATTCGACCCAGGCCGCACTTAGCTAGAGGAGATGATGAGGTTGAAGATGGATTAAGCTATAGGAGAAGAACCCAGTTGCAGGAGTATAGGAGAGAACA CATTAACGGTGGCTTAGAACGAAATGGTGGTATCGTTGTTCCCCGTGAAGATGAAGAATTGAGGAGGTTACAATCTCCCTATGATGGTATCCGGCAACCT GTGTATCTGCAAGAGGATGTGAGGATTCATGATCCATTGGAGACGTTGCGGAGGAGTAGAAGTATGGAATTAGAAGGAGATAGTCGTGAGAGTCGGTTGC GTGATTGGGATCCATTGGATTATGATGACGAGTTAGGCAGTGGAGATAAGGATTGGAGTTACGAGGATATGGATGATGAAGAATTGTTGATGCCAGAAGA CTTGGAAGAACTGAGGCATGGGAGGGAGGGTTATAAGCCATTGGTCGTATCTCCACATTTCCAGCCAACAGGACAAATGCATCCAAGGAAGCGTTTCAAA TCTTCGAAAGGAAATATAGCGAATCGATTGGGGCCTGCTGCTGCTGAAAGTGTAAAGCAGCGATTGGGACCGAGGTTGGTTCCACCTGGTCGTAGTTCAA AGCAAGGATCTTCCCATGTTAAACAGCGGTTGGGACCTGCCTTGGAACCAGGGAAGAAAAACACTGGAGACGCTCAAAATGCTGCGAAGGTACCGCCCTG GTTGAAGGCTCGGGATAAAGGACAGCAGCAGAGGGTTTCTAATGAAACGGCCTCAAGTGCTAAAGGTTTCAAATCTTTGGCAGTGAAAGAGAAAGATACG AAGAAGACTGAGCCTCAGGAGGATTCCGAGGAGTTTATCCAGCTGGTGAATAGTGCTTTCTTGAAGCTCACCAAGTCGTTGAATGAGAATTCAGCCATAA GGAGAAAGTACACTGAGCAAGGTGGAGCTGGAGTTTTGAGATGCAGTGTATGTGGCAGTGACTCGAAAGATTTCATGGACACGCTGAGCTTGGCACAGCA TGCCTGCACGTCTACCAAAGCGGGTTCCAGAGCGGAGCATTTGGGTTTTCACAAAGCCCTTTGCTTGCTGATGGGTTGGAAGTGGGACATTGGCGATGTC GTAAAGGGTCCTTGGGTAAGGCAGAAATTGAGTGATGATGAAGCTTCGTCAATGAACGACGACCTTATACTGTGGCCGCCGGTTGTCGTCATTCATAACA GCTCAATATCGAGTGAAAATCACAACGAACGTATCATTGTAAGTATCGAAGACCTCCGATCCAGCCTCAAAGGCAAGGGATTCCGAGACTCGATAAACAT CTGCAGAGGCAAAGCTGCAAACCACAGCGTCATGGTAGTAAGCTTCGCGGCCACCTTCTCCGGTCTACAAGAGGCCGAGAAGCTTCACAGACTTTACTCC AACAACAAACACGGGAGGTCAGAGTTCCAACAAATCGGCACAACCACCAATAGAGGCGATGATGGCGACAAGAGAACGGTGGTGGAAGAAGGCGAGCATA ATGAGGAAGCAGCGGAAGCAGTACTATATGGGTTTCTAGGGATCACATCGGACTTGGATAAACTGGATTTCGAGATGAAGAAGAGGTGTGTGGTGAAGAG CAAGAAGGAGATTGATGCCATTGCAGATGCCACTTTGGAGAGGGTTGACAAAGGTTGA
AA sequence Show only first row Show all	>Lus10006278 pacid=23181452 polypeptide=Lus10006278 locus=Lus10006278.g ID=Lus10006278.BGIv1.0 annot-version=v1.0 MRDRRYDGRRTPSPHPSPPARGRGRDYREDKWRLPTSSYRAPPPGPQWSERDPLPPPPKTSRPPASFVPRRESEYHTVRNRNRSPPRSRFRSPRWQQPQR IASQYGRADDSVSRRRDYKDDRLYSDERYVRREDKLPSIGESLPRKELSGKFQWDNLPDRSTNLSPAAYRDVVGGSNPFNTRVSASAELIVRERPRTHYD YSIKPQVRAGRVADWDSSDKIHREEQPLVGNEDYIRPRPHLARGDDEVEDGLSYRRRTQLQEYRREHINGGLERNGGIVVPREDEELRRLQSPYDGIRQP VYLQEDVRIHDPLETLRRSRSMELEGDSRESRLRDWDPLDYDDELGSGDKDWSYEDMDDEELLMPEDLEELRHGREGYKPLVVSPHFQPTGQMHPRKRFK SSKGNIANRLGPAAAESVKQRLGPRLVPPGRSSKQGSSHVKQRLGPALEPGKKNTGDAQNAAKVPPWLKARDKGQQQRVSNETASSAKGFKSLAVKEKDT KKTEPQEDSEEFIQLVNSAFLKLTKSLNENSAIRRKYTEQGGAGVLRCSVCGSDSKDFMDTLSLAQHACTSTKAGSRAEHLGFHKALCLLMGWKWDIGDV VKGPWVRQKLSDDEASSMNDDLILWPPVVVIHNSSISSENHNERIIVSIEDLRSSLKGKGFRDSINICRGKAANHSVMVVSFAATFSGLQEAEKLHRLYS NNKHGRSEFQQIGTTTNRGDDGDKRTVVEEGEHNEEAAEAVLYGFLGITSDLDKLDFEMKKRCVVKSKKEIDAIADATLERVDKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22430			unknown protein		Lus10006278 [exp]	0	1
AT1G63160		EMB2811, RFC2	EMBRYO DEFECTIVE 2811, replica...		Lus10008003 [exp]	8.7	0.7854
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	14.1	0.7195
AT3G19440			Pseudouridine synthase family ...		Lus10002811 [exp]	15.7	0.7615
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10022801 [exp]	21.1	0.6851
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10000970 [exp]	26.2	0.7616
AT2G43650		EMB2777	EMBRYO DEFECTIVE 2777, Sas10/U...		Lus10012061 [exp]	31.0	0.7480
AT3G56990		EDA7	embryo sac development arrest ...		Lus10019107 [exp]	35.3	0.7560
AT2G20060			Ribosomal protein L4/L1 family...		Lus10005427 [exp]	36.8	0.7322
AT5G64320			Pentatricopeptide repeat (PPR)...		Lus10038804 [exp]	40.2	0.7518
AT1G26170			ARM repeat superfamily protein...		Lus10000328 [exp]	43.9	0.7427

Compare expression of checked genes

Lus10006278 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.