Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18770 57 / 1e-10 RING/U-box superfamily protein (.1) AT4G12190 55 / 4e-10 RING/U-box superfamily protein (.1) AT1G18780 59 / 5e-10 RING/U-box superfamily protein (.1) AT1G14200 57 / 6e-10 RING/U-box superfamily protein (.1) AT1G60360 58 / 7e-10 RING/U-box superfamily protein (.1) AT4G05350 57 / 9e-10 RING/U-box superfamily protein (.1) AT3G19950 58 / 1e-09 RING/U-box superfamily protein (.1) AT1G18760 57 / 1e-09 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT5G08139 57 / 1e-09 RING/U-box superfamily protein (.1) AT3G46620 57 / 2e-09 zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020558 [exp] 172 / 1e-54 AT1G18760 56 / 1e-10 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10034793 [exp] 132 / 2e-38 AT5G59550 48 / 9e-07 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10007628 [exp] 107 / 1e-27 AT4G12140 60 / 2e-10 RING/U-box superfamily protein (.1) Lus10012376 [exp] 103 / 1e-27 AT3G46620 60 / 3e-11 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028009 [exp] 91 / 2e-22 AT5G59550 57 / 5e-10 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10017722 [exp] 73 / 1e-15 AT3G19950 64 / 5e-12 RING/U-box superfamily protein (.1) Lus10033682 [exp] 72 / 4e-15 AT3G19950 67 / 5e-13 RING/U-box superfamily protein (.1) Lus10011392 [exp] 58 / 6e-10 AT5G59550 75 / 2e-15 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10025612 [exp] 58 / 1e-09 AT1G60360 234 / 7e-75 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G118000 [exp] 65 / 1e-12 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G107000 [exp] 64 / 3e-12 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.001G103900 [exp] 60 / 8e-11 AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) Potri.005G062400 [exp] 60 / 1e-10 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.002G085800 [exp] 59 / 5e-10 AT1G60360 233 / 4e-74 RING/U-box superfamily protein (.1) Potri.016G082500 [exp] 58 / 6e-10 AT5G02750 176 / 1e-53 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) Potri.019G086500 [exp] 57 / 1e-09 AT4G05350 64 / 2e-12 RING/U-box superfamily protein (.1) Potri.006G216200 [exp] 57 / 2e-09 AT5G02750 175 / 1e-53 SHOOT GRAVITROPISM 9, RING/U-box superfamily protein (.1) Potri.013G116000 [exp] 56 / 2e-09 AT3G30460 61 / 2e-11 RING/U-box superfamily protein (.1) Potri.006G219000 [exp] 56 / 3e-09 AT5G08139 75 / 7e-15 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10006279 pacid=23181443 polypeptide=Lus10006279 locus=Lus10006279.g ID=Lus10006279.BGIv1.0 annot-version=v1.0 ATGAGTTACCTGCAAAGTTTCCCTTACGGCTCCGCACAGTCCATCGACGGACAGATGGTTCTCGACGCAACAATTTCGCCGCCTCCGCCTCCCCACGTTT CCCGAACTGCCGTTGGTCGGGGAAATTGGCCACCGCAATTCAACCGCCGAAACACTGATCCGTCGTCAACCCCGCTAGGTTCTTGGGGATATCAGATGCC TCTGCCGGCGGGAGTATTCGTCCAAGCAAATCCAGCGGCGAGATCGGGCAGCCGATACCCAGAAGCTGATTCACGGAGACAGAGTATTCCACGCCGTTAC AATGTCGGACGAGAACAATTGGCGACAGAGTTCCATCAGGGGGAGGAAACGGTGGTTGTGATGCCACCTCCGCCAGCGGCGCATGGGCAGAGGAGGAGGC GACTCCGTTACGTACGAGAAGAATTCCCGGCAGAATTCCGTGATCAGATGGAGGCGGCGGTGTCGGAATCCGCCGAAGAATACGAGATCAGGACTACCGG TGCTTCGGAATTGGCAATTCAGAAGCTGGAGAGGGTGGAGACCGGCGGTGGAGAATGGAAACAGGGTTATTGCTGCACAATTTGTCTCGAAGAGATGGGT TCCGGCGAAGGAAAGGCGATAAGGATAGATTGCAAGCATGAGTTCCACGAAATTTGCTTGATTTCGTGGCTTCGGAAATCGAATTGCTGCCCATTGTGCA GATTTCAGATTCCAGATTGA
AA sequence Show only first row Show all	>Lus10006279 pacid=23181443 polypeptide=Lus10006279 locus=Lus10006279.g ID=Lus10006279.BGIv1.0 annot-version=v1.0 MSYLQSFPYGSAQSIDGQMVLDATISPPPPPHVSRTAVGRGNWPPQFNRRNTDPSSTPLGSWGYQMPLPAGVFVQANPAARSGSRYPEADSRRQSIPRRY NVGREQLATEFHQGEETVVVMPPPPAAHGQRRRRLRYVREEFPAEFRDQMEAAVSESAEEYEIRTTGASELAIQKLERVETGGGEWKQGYCCTICLEEMG SGEGKAIRIDCKHEFHEICLISWLRKSNCCPLCRFQIPD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18760			Zinc finger, C3HC4 type (RING ...		Lus10006279 [exp]	0	1
AT1G13340			Regulator of Vps4 activity in ...		Lus10041468 [exp]	3.0	0.7585
					Lus10041320 [exp]	6.6	0.7495
					Lus10008679 [exp]	10.5	0.6816
AT5G25910		AtRLP52	receptor like protein 52 (.1)		Lus10016112 [exp]	14.3	0.7067
					Lus10005747 [exp]	17.6	0.7440
AT3G27785	MYB	PGA37, ATMYB118	PLANT GROWTH ACTIVATOR 37, myb...		Lus10013084 [exp]	26.3	0.7169
AT4G10270			Wound-responsive family protei...		Lus10033729 [exp]	26.4	0.6941
AT3G58720			RING/U-box superfamily protein...		Lus10040151 [exp]	28.8	0.7343
AT5G20480		EFR	EF-TU receptor (.1)		Lus10026938 [exp]	32.8	0.7065
AT1G48590			Calcium-dependent lipid-bindin...		Lus10003710 [exp]	33.9	0.7436

Compare expression of checked genes

Lus10006279 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.