Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27760 493 / 2e-172 IPPT, ATIPT2 tRNAisopentenyltransferase 2 (.1) AT3G19160 151 / 1e-41 PGA22, ATIPT8 isopentenyltransferase 8, ATP/ADP isopentenyltransferases (.1) AT1G68460 132 / 3e-34 ATIPT1 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) AT5G19040 130 / 5e-34 ATIPT5 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) AT4G24650 125 / 4e-32 ATIPT4 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 4, isopentenyltransferase 4 (.1) AT3G23630 120 / 2e-30 ATIPT7 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 7, isopentenyltransferase 7 (.1) AT3G63110 119 / 9e-30 ATIPT3 isopentenyltransferase 3 (.1) AT1G25410 118 / 2e-29 ATIPT6 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 6, isopentenyltransferase 6 (.1) AT5G20040 94 / 3e-20 ATIPT9 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020566 [exp] 880 / 0 AT2G27760 491 / 1e-171 tRNAisopentenyltransferase 2 (.1) Lus10034334 [exp] 181 / 5e-53 AT1G68460 267 / 3e-88 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10034333 [exp] 166 / 8e-47 AT1G68460 258 / 1e-83 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10028015 [exp] 134 / 6e-35 AT3G63110 327 / 3e-111 isopentenyltransferase 3 (.1) Lus10034332 [exp] 134 / 1e-34 AT1G68460 304 / 3e-101 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Lus10012372 [exp] 129 / 4e-33 AT3G63110 332 / 5e-113 isopentenyltransferase 3 (.1) Lus10004428 [exp] 127 / 5e-33 AT5G19040 372 / 2e-129 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10034025 [exp] 125 / 3e-32 AT5G19040 378 / 7e-132 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Lus10012051 [exp] 94 / 2e-20 AT5G20040 505 / 1e-177 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G147600 [exp] 620 / 0 AT2G27760 544 / 0.0 tRNAisopentenyltransferase 2 (.1) Potri.014G139300 [exp] 161 / 2e-45 AT3G63110 356 / 7e-123 isopentenyltransferase 3 (.1) Potri.008G202200 [exp] 135 / 7e-36 AT5G19040 396 / 9e-139 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.010G030500 [exp] 131 / 2e-34 AT5G19040 365 / 1e-126 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.010G123801 [exp] 131 / 7e-34 AT1G68460 338 / 4e-115 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.004G150900 [exp] 122 / 7e-31 AT5G19040 257 / 6e-84 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.008G121500 [exp] 117 / 5e-29 AT1G68460 348 / 6e-119 Arabidopsis thaliana isopentenyltransferase 1, isopentenyltransferase 1 (.1) Potri.008G033300 [exp] 108 / 1e-26 AT5G19040 235 / 3e-76 Arabidopsis thaliana ISOPENTENYLTRANSFERASE 5, isopentenyltransferase 5 (.1) Potri.001G376600 [exp] 93 / 4e-20 AT5G20040 568 / 0.0 ARABIDOPSIS THALIANA ISOPENTENYLTRANSFERASE 9, isopentenyltransferase 9 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01715 [flax] [poplar] IPPT IPP transferase
Representative CDS sequence Show only first row Show all	>Lus10006281 pacid=23181465 polypeptide=Lus10006281 locus=Lus10006281.g ID=Lus10006281.BGIv1.0 annot-version=v1.0 ATGGACGGCGACGCTCCGGCGGCTCCCCTGCATAACCTTAATCTTCAATCAGAGGTTCCGGCAACGACAAGGGAATCTCTGCAAGAGCAGAAACCAAAAG TAGTGGTGATCATGGGCGCCACCGGAGCAGGAAAATCGAAACTCGCTGTCGATTTGGCAGCTCACTTCCCGATCGAAATCATCAACGCCGATTCCATGCA AGTCTACCGTGGGCTTGATGTACTCACCAACAAAGTCCCCGTGGACGAGCAGAAAGGTGTGCCTCATCATCTTCTGGGTACTGTGAATCCGAATGTTGAA TTCACGGCAAAGGAGTTCAGGGATTCTGCGCTTCCTATCATCAATGCCATAAGGAGTCGTAACTGCCTACCAGTTGTTGTCGGAGGCACAAATTACTATA TTCAAGCTCTTGTAAGCTCATTCCTTCTAGATGAGACAGCAGAAGATGATATTCCTGAAGATGAGGAGACCAATCACTTATTGACTGAGTCGGCTGGAGA AAGTTTCAGATGTGATTATGAGTATCTTAGAGCTGTTGATCCTGTTGCAGCAGATAGAATCCACCCAAATAACTACAGAAAAATCAATCAGTATCTTAAT TTGTATGCTCGATCCGGTGTTCTTCCTAGCAGAGTTTACCAGGGAAAAGCTGCAGAGAACTGGGGTCGTGTTGACAGTTATAGGTTTGATTGCTGTTTTA TATGCGTTGATGCCTCTGTGTCCGTACTGGACCACTACGTCGACCACAGAGTGGATTGCATGGTCGATGCTGGGTTGCTCCACGAAGTTTACGAGATTTA CAATGCCGAAGCCGATTACACTCGAGGTTTGCGCCAAGCCATTGGTGTAAGAGAGTTTGAGGATATTCTGAGAGCTTACCACTCAGAGCAATCGTTGGCA AAGAATATTGTGAAAGATAATAATCTAAGGGAAGTCCTCCATTCAACTGATGATGATAATCCTCACAAAATTCTTCTAACAGAAGCAATTTCCAAAGTAA AGTTGAATACCAGAAGACTCGTCCGCCGTCAAAAAAGGATGCATATACGGCTTCAGAGATTGTTCGGCTGGAATATACATTACGTAGATTCGACAGAGGC AATATCATGTAAATCGGATGATTCATGGACCAGCCAAGTACTTGGACCAGCTGTGAAATTTGTTGAATCGTTTCTTGACGAGGAAGATACCCTCCTGGTG CGTGAGTCCACGATCGGTGGTGCAATTACAGCAATCGAAAGGGACCTGTGGACCCAATACACATGCAAGGCTTGCGGGGATAAGGTGCTTAGAGGAGCTC ATGAATGGGAGCAGCATAAGCAAGGTCGTGGTCATCGGAAACGGATTTCGAAACTTAAAAAATCTCAAGGACCGGGAGGAAAAACAGAATCAGAACCAGA AGCAGAAGCAAGACCCTGCTTGAGCAGAGTTACTAGTTGA
AA sequence Show only first row Show all	>Lus10006281 pacid=23181465 polypeptide=Lus10006281 locus=Lus10006281.g ID=Lus10006281.BGIv1.0 annot-version=v1.0 MDGDAPAAPLHNLNLQSEVPATTRESLQEQKPKVVVIMGATGAGKSKLAVDLAAHFPIEIINADSMQVYRGLDVLTNKVPVDEQKGVPHHLLGTVNPNVE FTAKEFRDSALPIINAIRSRNCLPVVVGGTNYYIQALVSSFLLDETAEDDIPEDEETNHLLTESAGESFRCDYEYLRAVDPVAADRIHPNNYRKINQYLN LYARSGVLPSRVYQGKAAENWGRVDSYRFDCCFICVDASVSVLDHYVDHRVDCMVDAGLLHEVYEIYNAEADYTRGLRQAIGVREFEDILRAYHSEQSLA KNIVKDNNLREVLHSTDDDNPHKILLTEAISKVKLNTRRLVRRQKRMHIRLQRLFGWNIHYVDSTEAISCKSDDSWTSQVLGPAVKFVESFLDEEDTLLV RESTIGGAITAIERDLWTQYTCKACGDKVLRGAHEWEQHKQGRGHRKRISKLKKSQGPGGKTESEPEAEARPCLSRVTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27760		IPPT, ATIPT2	tRNAisopentenyltransferase 2 (...		Lus10006281 [exp]	0	1
AT4G17020			transcription factor-related (...		Lus10012849 [exp]	2.2	0.9323
AT5G67250		VFB4, SKIP2	VIER F-BOX PROTEINE 4, SKP1/AS...		Lus10019319 [exp]	4.2	0.9181
AT4G22285			Ubiquitin C-terminal hydrolase...		Lus10003795 [exp]	4.8	0.8783
AT3G50000		ATCKA2, CKA2	"casein kinase II, alpha chain...		Lus10011534 [exp]	5.5	0.8891
AT1G04300			TRAF-like superfamily protein ...		Lus10022207 [exp]	7.7	0.9020
AT1G43860			sequence-specific DNA binding ...		Lus10042780 [exp]	8.4	0.9036
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Lus10016998 [exp]	10.5	0.9116
AT1G47720		OSB1	Organellar Single-stranded, Pr...		Lus10021767 [exp]	12.6	0.8920
AT5G61330			rRNA processing protein-relate...		Lus10020496 [exp]	15.0	0.8841
AT2G45500			AAA-type ATPase family protein...		Lus10009233 [exp]	15.1	0.9046

Compare expression of checked genes

Lus10006281 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.